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Jennifer Babik, MD, PhD

Title(s)Associate Professor, Medicine
SchoolSchool of Medicine
Address505 Parnassus Avenue
San Francisco CA 94117
Phone415-502-6688
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    Collapse Biography 
    Collapse Education and Training
    Princeton UniversityBA1995Molecular Biology
    University of OxfordPhD1999Physiological Sciences
    Stanford UniversityM.D.2003School of Medicine
    UCSFResidency2006Internal Medicine
    UCSFFellowship2009Infectious Diseases
    University of California, San Francisco, CA2018Diversity, Equity, and Inclusion Champion Training
    Collapse Awards and Honors
    UCSF2018Excellence in Teaching Award, Class of 2018
    UCSF2018Master Clinician, Department of Medicine

    Collapse Overview 
    Collapse Overview
    CLINICAL ACTIVITIES
    Jennifer Babik specializes in clinical infectious diseases with a particular focus on infections in immunocompromised hosts. She attends on the Immunocompromised Host and General Infectious Diseases Consult Services, the Internal Medicine teaching wards, and has clinic in the Infectious Diseases Practice at UCSF Medical Center.

    EDUCATIONAL PURSUITS
    She is very interested in medical education and has two main educational leadership roles. She is the Associate Program Director for Subspecialty Education for the Internal Medicine Residency and the Assistant Program Director for Curriculum for the Infectious Diseases Fellowship. She gives clinical lectures for students, residents and fellows in residency and fellowship core lecture series. She also gives lectures to medical, pharmacy, and dental students and is a small group leader in the medical student course Pathogens and Host Defense. Her primary interests in medical educational are creating innovative ways to teach clinical infectious diseases to learners at all levels, developing best practices for effective teaching by consultants, and curriculum development for subspecialty education within internal medicine residency training.

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Zoonotic coronavirus epidemics: SARS, MERS, and COVID-19. Ann Allergy Asthma Immunol. 2020 Dec 10. Fung M, Otani I, Pham M, Babik J. PMID: 33310180.
      View in: PubMed   Mentions:    Fields:    
    2. Virtual Interviews at Graduate Medical Education Training Programs: Determining Evidence-Based Best Practices. Acad Med. 2020 Dec 08. Huppert LA, Hsiao EC, Cho KC, Marquez C, Chaudhry RI, Frank J, Goglin SE, Hsu G, Kathpalia P, Khanna R, Kompala T, Rao MN, Bower BA, Trafas V, Santhosh L, Schwartz BS, Babik JM. PMID: 33298691.
      View in: PubMed   Mentions:    Fields:    
    3. Upper airway gene expression reveals suppressed immune responses to SARS-CoV-2 compared with other respiratory viruses. Nat Commun. 2020 11 17; 11(1):5854. Mick E, Kamm J, Pisco AO, Ratnasiri K, Babik JM, Castañeda G, DeRisi JL, Detweiler AM, Hao SL, Kangelaris KN, Kumar GR, Li LM, Mann SA, Neff N, Prasad PA, Serpa PH, Shah SJ, Spottiswoode N, Tan M, Calfee CS, Christenson SA, Kistler A, Langelier C. PMID: 33203890.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCellsPHPublic Health
    4. Best Practices to Successfully Navigate a Virtual Interview: a Five-Step Guide for Hematology/Oncology Fellowship Applicants. J Cancer Educ. 2020 Oct; 35(5):860-861. Huppert LA, Babik JM. PMID: 32808251.
      View in: PubMed   Mentions:    Fields:    
    5. Treatment of immunocompromised COVID-19 patients with convalescent plasma. Transpl Infect Dis. 2020 Sep 29; e13477. Fung M, Nambiar A, Pandey S, Aldrich JM, Teraoka J, Freise C, Roberts J, Chandran S, Hays SR, Bainbridge E, DeVoe C, Roque Gardner A, Yokoe D, Henrich TJ, Babik JM, Chin-Hong P. PMID: 32989856.
      View in: PubMed   Mentions: 1     Fields:    
    6. Clinical Utility of Universal Broad-Range Polymerase Chain Reaction Amplicon Sequencing for Pathogen Identification: A Retrospective Cohort Study. Clin Infect Dis. 2020 Sep 12; 71(6):1554-1557. Kerkhoff AD, Rutishauser RL, Miller S, Babik JM. PMID: 31907545.
      View in: PubMed   Mentions:    Fields:    
    7. Clinical features, diagnostics, and outcomes of patients presenting with acute respiratory illness: A retrospective cohort study of patients with and without COVID-19. EClinicalMedicine. 2020 Oct; 27:100518. Shah SJ, Barish PN, Prasad PA, Kistler A, Neff N, Kamm J, Li LM, Chiu CY, Babik JM, Fang MC, Abe-Jones Y, Alipanah N, Alvarez FN, Botvinnik OB, Castaneda G, Dadasovich RM, Davis J, Deng X, DeRisi JL, Detweiler AM, Federman S, Haliburton J, Hao S, Kerkhoff AD, Kumar GR, Malcolm KB, Mann SA, Martinez S, Mary RK, Mick E, Mwakibete L, Najafi N, Peluso MJ, Phelps M, Pisco AO, Ratnasiri K, Rubio LA, Sellas A, Sherwood KD, Sheu J, Spottiswoode N, Tan M, Yu G, Kangelaris KN, Langelier C. PMID: 32864588.
      View in: PubMed   Mentions:
    8. Gender Differences in Authorship of Clinical Problem-Solving Articles. J Hosp Med. 2020 08; 15(8):475-478. Adler E, Hobbs A, Dhaliwal G, Babik JM. PMID: 32804608.
      View in: PubMed   Mentions:    Fields:    
    9. Clinical outcomes and serologic response in solid organ transplant recipients with COVID-19: A case series from the United States. Am J Transplant. 2020 11; 20(11):3225-3233. Fung M, Chiu CY, DeVoe C, Doernberg SB, Schwartz BS, Langelier C, Henrich TJ, Yokoe D, Davis J, Hays SR, Chandran S, Kukreja J, Ng D, Prostko J, Taylor R, Reyes K, Bainbridge E, Bond A, Chin-Hong P, Babik JM. PMID: 32476258.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansPHPublic Health
    10. Diversity of the Infectious Diseases Trainee Pipeline: The Future Looks Bright, but We Must Not Be Complacent. J Infect Dis. 2020 Jul 06; 222(3):511-513. Santhosh L, Babik JM. PMID: 31943040.
      View in: PubMed   Mentions:    Fields:    
    11. COVID-19 in Immunocompromised Hosts: What We Know So Far. Clin Infect Dis. 2020 Jun 27. Fung M, Babik JM. PMID: 32592461.
      View in: PubMed   Mentions: 9     Fields:    
    12. Getting Neighborly in 2030: A Shared Fellow Workspace Improves Communication, Teaching, and Burnout. J Grad Med Educ. 2020 Jun; 12(3):358-360. Block BL, Anderson D, O'Brien B, Babik J. PMID: 32595866.
      View in: PubMed   Mentions:    Fields:    
    13. Diversity in the Pulmonary and Critical Care Medicine Pipeline. Trends in Gender, Race, and Ethnicity among Applicants and Fellows. . 2020 Jun 1; 1(2):152-160. Lekshmi Santhosh, Jennifer M. Babik. .
      View in: Publisher Site   Mentions:
    14. Upper airway gene expression differentiates COVID-19 from other acute respiratory illnesses and reveals suppression of innate immune responses by SARS-CoV-2. medRxiv. 2020 May 19. Mick E, Kamm J, Pisco AO, Ratnasiri K, Babik JM, Calfee CS, Castañeda G, DeRisi JL, Detweiler AM, Hao S, Kangelaris KN, Kumar GR, Li LM, Mann SA, Neff N, Prasad PA, Serpa PH, Shah SJ, Spottiswoode N, Tan M, Christenson SA, Kistler A, Langelier C. PMID: 32511476.
      View in: PubMed   Mentions:
    15. Response to: Is Burnout Infectious? Understanding Drivers of Burnout and Job Satisfaction Among Academic Infectious Diseases Physicians. Open Forum Infect Dis. 2020 Apr; 7(4):ofaa098. Budak JZ, Brickman CE, Abdoler EA, Wallender EK, Mulliken JS, Kerkhoff AD, Lampiris H, Babik JM, Koss CA, Schwartz BS. PMID: 32284950.
      View in: PubMed   Mentions:
    16. Coccidioidomycosis Presenting with Fever and Back Pain. J Gen Intern Med. 2020 Jun; 35(6):1887-1888. Pillsbury MM, Rubio LA, Lucas CG, Babik JM. PMID: 32185657.
      View in: PubMed   Mentions:    Fields:    
    17. Trends in Racial and Ethnic Diversity in Internal Medicine Subspecialty Fellowships From 2006 to 2018. JAMA Netw Open. 2020 02 05; 3(2):e1920482. Santhosh L, Babik JM. PMID: 32031642.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    18. Creating and Presenting an Effective Lecture. J Contin Educ Health Prof. 2020; 40(1):36-41. Babik JM, Luther VP. PMID: 32149947.
      View in: PubMed   Mentions:    Fields:    
    19. Diagnosis and Treatment of Acute Invasive Fungal Sinusitis in Cancer and Transplant Patients. Curr Infect Dis Rep. 2019 Nov 26; 21(12):53. Fung M, Babik J, Humphreys IM, Davis GE. PMID: 31773398.
      View in: PubMed   Mentions:
    20. 2534. Development of an Infectious Diseases Fellowship Well-Being Program. Open Forum Infectious Diseases. 2019 Oct 23; 6(Suppl 2):s881-s881. Jehan Budak, Cristina Brickman, Emily Abdoler, Erika Wallender, Jennifer S Mulliken, Andrew D Kerkhoff, Harry Lampiris, Jennifer M Babik, Catherine Koss, Brian Schwartz, Brian Schwartz. .
      View in: Publisher Site   Mentions:
    21. 236. The Comparative Utility Of Metagenomic Next-Generation Sequencing and Universal PCR for Pathogen Detection on Cerebrospinal Fluid: A Retrospective Analysis From a Tertiary Care Center. Open Forum Infectious Diseases. 2019 Oct 23; 6(Suppl 2):s134-s135. Andrew D Kerkhoff, Michelle Matzko, Charles Chiu, Steve Miller, Jennifer M Babik. .
      View in: Publisher Site   Mentions:
    22. Disseminated Cutaneous and Osteoarticular Sporotrichosis Mimicking Pyoderma Gangrenosum. Open Forum Infect Dis. 2019 Oct; 6(10):ofz395. Saeed L, Weber RJ, Puryear SB, Bahrani E, Peluso MJ, Babik JM, Haemel A, Coates SJ. PMID: 31660357.
      View in: PubMed   Mentions:
    23. Feasibility of implementing a resident oncology video curriculum. Journal of Clinical Oncology. 2019 May 20; 37(15_suppl):10500-10500. Sam Brondfield, Nicholas Iverson, Lakshmi Subbaraj, Jennifer Babik. .
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    24. Strategies to build a clinician-educator career. Clin Teach. 2020 04; 17(2):126-130. Santhosh L, Abdoler E, Babik JM. PMID: 30859740.
      View in: PubMed   Mentions:    Fields:    
    25. Clinical Features of Neutrophilic Dermatosis Variants Resembling Necrotizing Fasciitis. JAMA Dermatol. 2019 01 01; 155(1):79-84. Sanchez IM, Lowenstein S, Johnson KA, Babik J, Haag C, Keller JJ, Ortega-Loayza AG, Cohen J, McCalmont TH, Demer AM, Mansh MD, Hylwa SA, Liu J, Shinkai K. PMID: 30383110.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    26. Nontyphoidal Salmonella as a Cause of Mediastinal Abscess after Aortic Valve Replacement: A Case Report and Review of Postoperative Salmonella Infections. Case Rep Infect Dis. 2018; 2018:6758672. Spottiswoode N, Peluso MJ, Deuse T, Babik JM. PMID: 30598848.
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    27. 415. Breakthrough Invasive Fungal Infections in Adult Hematologic Malignancy Patients Receiving Isavuconazole Prophylaxis. Open Forum Infectious Diseases. 2018 Nov 26; 5(suppl_1):s158-s159. Catherine DeVoe, Monica Fung, Brian Schwartz, Sarah B Doernberg, Mimi Lo, Larissa Graff, Marisela Tan, Aaron Logan, Jennifer Babik, Peter Chin-Hong. .
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    28. 1322. Impact of Hospital Medicine on Trends in Infectious Diseases and Other Subspecialty Fellowship Applications. Open Forum Infectious Diseases. 2018 Nov 26; 5(suppl_1):s404-s404. Lekshmi Santhosh, Jennifer Babik. .
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    29. Breakthrough Invasive Fungal Infections on Isavuconazole Prophylaxis and Treatment: What Is Happening in the Real-World Setting? Clin Infect Dis. 2018 09 14; 67(7):1142-1143. Fung M, Schwartz BS, Doernberg SB, Langelier C, Lo M, Graff L, Tan M, Logan AC, Chin-Hong P, Babik JM. PMID: 29617983.
      View in: PubMed   Mentions: 10     Fields:    Translation:Humans
    30. Whither the Pulmonary Ward Attending? Preserving Subspecialty Exposure in United States Internal Medicine Residency Training. Ann Am Thorac Soc. 2017 Apr; 14(4):565-568. Santhosh L, Babik J, Looney MR, Hollander H. PMID: 28362539.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    31. Disseminated Acanthamoeba infection in a heart transplant recipient treated successfully with a miltefosine-containing regimen: Case report and review of the literature. Transpl Infect Dis. 2017 Apr; 19(2). Brondfield MN, Reid MJ, Rutishauser RL, Cope JR, Tang J, Ritter JM, Matanock A, Ali I, Doernberg SB, Hilts-Horeczko A, DeMarco T, Klein L, Babik JM. PMID: 28067969.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansAnimals
    32. Raccoon Roundworm Infection Associated with Central Nervous System Disease and Ocular Disease - Six States, 2013-2015. MMWR Morb Mortal Wkly Rep. 2016 Sep 09; 65(35):930-3. Sircar AD, Abanyie F, Blumberg D, Chin-Hong P, Coulter KS, Cunningham D, Huskins WC, Langelier C, Reid M, Scott BJ, Shirley DA, Babik JM, Belova A, Sapp SG, McAuliffe I, Rivera HN, Yabsley MJ, Montgomery SP. PMID: 27608169.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansAnimals
    33. Baylisascaris procyonis-Associated Meningoencephalitis in a Previously Healthy Adult, California, USA. Emerg Infect Dis. 2016 08; 22(8):1480-4. Langelier C, Reid MJ, Halabi C, Witek N, LaRiviere A, Shah M, Wilson MR, Chin-Hong P, Douglas V, Kazacos KR, Babik JM. PMID: 27434260.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansAnimals
    34. Broad-range PCR for early diagnosis of nosocomial Enterococcus gallinarum meningitis. Infect Dis (Lond). 2016 Aug; 48(8):640-2. Su PY, Miller S, Rutishauser RL, Babik J. PMID: 27097275.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    35. Epstein-Barr virus encephalitis in a renal transplant recipient manifesting as hemorrhagic, ring-enhancing mass lesions. Transpl Infect Dis. 2015 Oct; 17(5):744-50. Babik JM, Katrak S, Miller S, Shah M, Chin-Hong P. PMID: 26252540.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    36. Transplant tourism: understanding the risks. Curr Infect Dis Rep. 2015 Apr; 17(4):473. Babik JM, Chin-Hong P. PMID: 25870141.
      View in: PubMed   Mentions:
    37. The human fetal immune response to hepatitis C virus exposure in utero. J Infect Dis. 2011 Jan 15; 203(2):196-206. Babik JM, Cohan D, Monto A, Hartigan-O'Connor DJ, McCune JM. PMID: 21288819.
      View in: PubMed   Mentions: 14     Fields:    Translation:HumansCells
    38. Impact of highly active antiretroviral therapy and immunologic status on hepatitis C virus quasispecies diversity in human immunodeficiency virus/hepatitis C virus-coinfected patients. J Virol. 2003 Feb; 77(3):1940-50. Babik JM, Holodniy M. PMID: 12525628.
      View in: PubMed   Mentions: 19     Fields:    Translation:HumansCells
    39. The role of Sp1 and NF-kappa B in regulating CD40 gene expression. J Biol Chem. 2002 Mar 15; 277(11):8890-7. Tone M, Tone Y, Babik JM, Lin CY, Waldmann H. PMID: 11751910.
      View in: PubMed   Mentions: 24     Fields:    Translation:Cells
    40. Expression of murine IL-12 is regulated by translational control of the p35 subunit. J Immunol. 1999 Apr 01; 162(7):4069-78. Babik JM, Adams E, Tone Y, Fairchild PJ, Tone M, Waldmann H. PMID: 10201930.
      View in: PubMed   Mentions: 17     Fields:    Translation:AnimalsCells
    41. Structure and chromosomal location of the mouse interleukin-12 p35 and p40 subunit genes. Eur J Immunol. 1996 Jun; 26(6):1222-7. Tone Y, Thompson SA, Babik JM, Nolan KF, Tone M, Raven C, Waldmann H. PMID: 8647196.
      View in: PubMed   Mentions: 18     Fields:    Translation:AnimalsCells
    42. Protein design by binary patterning of polar and nonpolar amino acids. Science. 1993 Dec 10; 262(5140):1680-5. Kamtekar S, Schiffer JM, Xiong H, Babik JM, Hecht MH. PMID: 8259512.
      View in: PubMed   Mentions: 172     Fields:    Translation:Cells
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