Jennifer Babik, MD, PhD
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Title(s) | Associate Professor, Medicine |
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School | School of Medicine |
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Address | 505 Parnassus Avenue San Francisco CA 94117
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Phone | 415-502-6688 |
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vCard | Download vCard |
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Biography Princeton University | BA | 1995 | Molecular Biology | University of Oxford | PhD | 1999 | Physiological Sciences | Stanford University | M.D. | 2003 | School of Medicine | UCSF | Residency | 2006 | Internal Medicine | UCSF | Fellowship | 2009 | Infectious Diseases | University of California, San Francisco, CA | | 2018 | Diversity, Equity, and Inclusion Champion Training |
UCSF | 2018 | | Excellence in Teaching Award, Class of 2018 | UCSF | 2018 | | Master Clinician, Department of Medicine |
Overview CLINICAL ACTIVITIES Jennifer Babik specializes in clinical infectious diseases with a particular focus on infections in immunocompromised hosts. She attends on the Immunocompromised Host and General Infectious Diseases Consult Services, the Internal Medicine teaching wards, and has clinic in the Infectious Diseases Practice at UCSF Medical Center.
EDUCATIONAL PURSUITS She is very interested in medical education and has two main educational leadership roles. She is the Associate Program Director for Subspecialty Education for the Internal Medicine Residency and the Assistant Program Director for Curriculum for the Infectious Diseases Fellowship. She gives clinical lectures for students, residents and fellows in residency and fellowship core lecture series. She also gives lectures to medical, pharmacy, and dental students and is a small group leader in the medical student course Pathogens and Host Defense. Her primary interests in medical educational are creating innovative ways to teach clinical infectious diseases to learners at all levels, developing best practices for effective teaching by consultants, and curriculum development for subspecialty education within internal medicine residency training.
Bibliographic
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Zoonotic coronavirus epidemics: SARS, MERS, and COVID-19. Ann Allergy Asthma Immunol. 2020 Dec 10.
Fung M, Otani I, Pham M, Babik J. PMID: 33310180.
View in: PubMed Mentions: Fields:
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Virtual Interviews at Graduate Medical Education Training Programs: Determining Evidence-Based Best Practices. Acad Med. 2020 Dec 08.
Huppert LA, Hsiao EC, Cho KC, Marquez C, Chaudhry RI, Frank J, Goglin SE, Hsu G, Kathpalia P, Khanna R, Kompala T, Rao MN, Bower BA, Trafas V, Santhosh L, Schwartz BS, Babik JM. PMID: 33298691.
View in: PubMed Mentions: Fields:
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Upper airway gene expression reveals suppressed immune responses to SARS-CoV-2 compared with other respiratory viruses. Nat Commun. 2020 11 17; 11(1):5854.
Mick E, Kamm J, Pisco AO, Ratnasiri K, Babik JM, Castañeda G, DeRisi JL, Detweiler AM, Hao SL, Kangelaris KN, Kumar GR, Li LM, Mann SA, Neff N, Prasad PA, Serpa PH, Shah SJ, Spottiswoode N, Tan M, Calfee CS, Christenson SA, Kistler A, Langelier C. PMID: 33203890.
View in: PubMed Mentions: 1 Fields: Translation: HumansCellsPHPublic Health
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Best Practices to Successfully Navigate a Virtual Interview: a Five-Step Guide for Hematology/Oncology Fellowship Applicants. J Cancer Educ. 2020 Oct; 35(5):860-861.
Huppert LA, Babik JM. PMID: 32808251.
View in: PubMed Mentions: Fields:
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Treatment of immunocompromised COVID-19 patients with convalescent plasma. Transpl Infect Dis. 2020 Sep 29; e13477.
Fung M, Nambiar A, Pandey S, Aldrich JM, Teraoka J, Freise C, Roberts J, Chandran S, Hays SR, Bainbridge E, DeVoe C, Roque Gardner A, Yokoe D, Henrich TJ, Babik JM, Chin-Hong P. PMID: 32989856.
View in: PubMed Mentions: 1 Fields:
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Clinical Utility of Universal Broad-Range Polymerase Chain Reaction Amplicon Sequencing for Pathogen Identification: A Retrospective Cohort Study. Clin Infect Dis. 2020 Sep 12; 71(6):1554-1557.
Kerkhoff AD, Rutishauser RL, Miller S, Babik JM. PMID: 31907545.
View in: PubMed Mentions: Fields:
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Clinical features, diagnostics, and outcomes of patients presenting with acute respiratory illness: A retrospective cohort study of patients with and without COVID-19. EClinicalMedicine. 2020 Oct; 27:100518.
Shah SJ, Barish PN, Prasad PA, Kistler A, Neff N, Kamm J, Li LM, Chiu CY, Babik JM, Fang MC, Abe-Jones Y, Alipanah N, Alvarez FN, Botvinnik OB, Castaneda G, Dadasovich RM, Davis J, Deng X, DeRisi JL, Detweiler AM, Federman S, Haliburton J, Hao S, Kerkhoff AD, Kumar GR, Malcolm KB, Mann SA, Martinez S, Mary RK, Mick E, Mwakibete L, Najafi N, Peluso MJ, Phelps M, Pisco AO, Ratnasiri K, Rubio LA, Sellas A, Sherwood KD, Sheu J, Spottiswoode N, Tan M, Yu G, Kangelaris KN, Langelier C. PMID: 32864588.
View in: PubMed Mentions:
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Gender Differences in Authorship of Clinical Problem-Solving Articles. J Hosp Med. 2020 08; 15(8):475-478.
Adler E, Hobbs A, Dhaliwal G, Babik JM. PMID: 32804608.
View in: PubMed Mentions: Fields:
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Clinical outcomes and serologic response in solid organ transplant recipients with COVID-19: A case series from the United States. Am J Transplant. 2020 11; 20(11):3225-3233.
Fung M, Chiu CY, DeVoe C, Doernberg SB, Schwartz BS, Langelier C, Henrich TJ, Yokoe D, Davis J, Hays SR, Chandran S, Kukreja J, Ng D, Prostko J, Taylor R, Reyes K, Bainbridge E, Bond A, Chin-Hong P, Babik JM. PMID: 32476258.
View in: PubMed Mentions: 8 Fields: Translation: HumansPHPublic Health
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Diversity of the Infectious Diseases Trainee Pipeline: The Future Looks Bright, but We Must Not Be Complacent. J Infect Dis. 2020 Jul 06; 222(3):511-513.
Santhosh L, Babik JM. PMID: 31943040.
View in: PubMed Mentions: Fields:
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COVID-19 in Immunocompromised Hosts: What We Know So Far. Clin Infect Dis. 2020 Jun 27.
Fung M, Babik JM. PMID: 32592461.
View in: PubMed Mentions: 9 Fields:
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Getting Neighborly in 2030: A Shared Fellow Workspace Improves Communication, Teaching, and Burnout. J Grad Med Educ. 2020 Jun; 12(3):358-360.
Block BL, Anderson D, O'Brien B, Babik J. PMID: 32595866.
View in: PubMed Mentions: Fields:
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Diversity in the Pulmonary and Critical Care Medicine Pipeline. Trends in Gender, Race, and Ethnicity among Applicants and Fellows. . 2020 Jun 1; 1(2):152-160.
Lekshmi Santhosh, Jennifer M. Babik. .
View in: Publisher Site Mentions:
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Upper airway gene expression differentiates COVID-19 from other acute respiratory illnesses and reveals suppression of innate immune responses by SARS-CoV-2. medRxiv. 2020 May 19.
Mick E, Kamm J, Pisco AO, Ratnasiri K, Babik JM, Calfee CS, Castañeda G, DeRisi JL, Detweiler AM, Hao S, Kangelaris KN, Kumar GR, Li LM, Mann SA, Neff N, Prasad PA, Serpa PH, Shah SJ, Spottiswoode N, Tan M, Christenson SA, Kistler A, Langelier C. PMID: 32511476.
View in: PubMed Mentions:
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Response to: Is Burnout Infectious? Understanding Drivers of Burnout and Job Satisfaction Among Academic Infectious Diseases Physicians. Open Forum Infect Dis. 2020 Apr; 7(4):ofaa098.
Budak JZ, Brickman CE, Abdoler EA, Wallender EK, Mulliken JS, Kerkhoff AD, Lampiris H, Babik JM, Koss CA, Schwartz BS. PMID: 32284950.
View in: PubMed Mentions:
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Coccidioidomycosis Presenting with Fever and Back Pain. J Gen Intern Med. 2020 Jun; 35(6):1887-1888.
Pillsbury MM, Rubio LA, Lucas CG, Babik JM. PMID: 32185657.
View in: PubMed Mentions: Fields:
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Trends in Racial and Ethnic Diversity in Internal Medicine Subspecialty Fellowships From 2006 to 2018. JAMA Netw Open. 2020 02 05; 3(2):e1920482.
Santhosh L, Babik JM. PMID: 32031642.
View in: PubMed Mentions: 2 Fields: Translation: Humans
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Creating and Presenting an Effective Lecture. J Contin Educ Health Prof. 2020; 40(1):36-41.
Babik JM, Luther VP. PMID: 32149947.
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Diagnosis and Treatment of Acute Invasive Fungal Sinusitis in Cancer and Transplant Patients. Curr Infect Dis Rep. 2019 Nov 26; 21(12):53.
Fung M, Babik J, Humphreys IM, Davis GE. PMID: 31773398.
View in: PubMed Mentions:
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2534. Development of an Infectious Diseases Fellowship Well-Being Program. Open Forum Infectious Diseases. 2019 Oct 23; 6(Suppl 2):s881-s881.
Jehan Budak, Cristina Brickman, Emily Abdoler, Erika Wallender, Jennifer S Mulliken, Andrew D Kerkhoff, Harry Lampiris, Jennifer M Babik, Catherine Koss, Brian Schwartz, Brian Schwartz. .
View in: Publisher Site Mentions:
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236. The Comparative Utility Of Metagenomic Next-Generation Sequencing and Universal PCR for Pathogen Detection on Cerebrospinal Fluid: A Retrospective Analysis From a Tertiary Care Center. Open Forum Infectious Diseases. 2019 Oct 23; 6(Suppl 2):s134-s135.
Andrew D Kerkhoff, Michelle Matzko, Charles Chiu, Steve Miller, Jennifer M Babik. .
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Disseminated Cutaneous and Osteoarticular Sporotrichosis Mimicking Pyoderma Gangrenosum. Open Forum Infect Dis. 2019 Oct; 6(10):ofz395.
Saeed L, Weber RJ, Puryear SB, Bahrani E, Peluso MJ, Babik JM, Haemel A, Coates SJ. PMID: 31660357.
View in: PubMed Mentions:
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Feasibility of implementing a resident oncology video curriculum. Journal of Clinical Oncology. 2019 May 20; 37(15_suppl):10500-10500.
Sam Brondfield, Nicholas Iverson, Lakshmi Subbaraj, Jennifer Babik. .
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Strategies to build a clinician-educator career. Clin Teach. 2020 04; 17(2):126-130.
Santhosh L, Abdoler E, Babik JM. PMID: 30859740.
View in: PubMed Mentions: Fields:
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Clinical Features of Neutrophilic Dermatosis Variants Resembling Necrotizing Fasciitis. JAMA Dermatol. 2019 01 01; 155(1):79-84.
Sanchez IM, Lowenstein S, Johnson KA, Babik J, Haag C, Keller JJ, Ortega-Loayza AG, Cohen J, McCalmont TH, Demer AM, Mansh MD, Hylwa SA, Liu J, Shinkai K. PMID: 30383110.
View in: PubMed Mentions: 1 Fields: Translation: HumansCells
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Nontyphoidal Salmonella as a Cause of Mediastinal Abscess after Aortic Valve Replacement: A Case Report and Review of Postoperative Salmonella Infections. Case Rep Infect Dis. 2018; 2018:6758672.
Spottiswoode N, Peluso MJ, Deuse T, Babik JM. PMID: 30598848.
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415. Breakthrough Invasive Fungal Infections in Adult Hematologic Malignancy Patients Receiving Isavuconazole Prophylaxis. Open Forum Infectious Diseases. 2018 Nov 26; 5(suppl_1):s158-s159.
Catherine DeVoe, Monica Fung, Brian Schwartz, Sarah B Doernberg, Mimi Lo, Larissa Graff, Marisela Tan, Aaron Logan, Jennifer Babik, Peter Chin-Hong. .
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1322. Impact of Hospital Medicine on Trends in Infectious Diseases and Other Subspecialty Fellowship Applications. Open Forum Infectious Diseases. 2018 Nov 26; 5(suppl_1):s404-s404.
Lekshmi Santhosh, Jennifer Babik. .
View in: Publisher Site Mentions:
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Breakthrough Invasive Fungal Infections on Isavuconazole Prophylaxis and Treatment: What Is Happening in the Real-World Setting? Clin Infect Dis. 2018 09 14; 67(7):1142-1143.
Fung M, Schwartz BS, Doernberg SB, Langelier C, Lo M, Graff L, Tan M, Logan AC, Chin-Hong P, Babik JM. PMID: 29617983.
View in: PubMed Mentions: 10 Fields: Translation: Humans
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Whither the Pulmonary Ward Attending? Preserving Subspecialty Exposure in United States Internal Medicine Residency Training. Ann Am Thorac Soc. 2017 Apr; 14(4):565-568.
Santhosh L, Babik J, Looney MR, Hollander H. PMID: 28362539.
View in: PubMed Mentions: 1 Fields: Translation: Humans
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Disseminated Acanthamoeba infection in a heart transplant recipient treated successfully with a miltefosine-containing regimen: Case report and review of the literature. Transpl Infect Dis. 2017 Apr; 19(2).
Brondfield MN, Reid MJ, Rutishauser RL, Cope JR, Tang J, Ritter JM, Matanock A, Ali I, Doernberg SB, Hilts-Horeczko A, DeMarco T, Klein L, Babik JM. PMID: 28067969.
View in: PubMed Mentions: 5 Fields: Translation: HumansAnimals
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Raccoon Roundworm Infection Associated with Central Nervous System Disease and Ocular Disease - Six States, 2013-2015. MMWR Morb Mortal Wkly Rep. 2016 Sep 09; 65(35):930-3.
Sircar AD, Abanyie F, Blumberg D, Chin-Hong P, Coulter KS, Cunningham D, Huskins WC, Langelier C, Reid M, Scott BJ, Shirley DA, Babik JM, Belova A, Sapp SG, McAuliffe I, Rivera HN, Yabsley MJ, Montgomery SP. PMID: 27608169.
View in: PubMed Mentions: 5 Fields: Translation: HumansAnimals
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Baylisascaris procyonis-Associated Meningoencephalitis in a Previously Healthy Adult, California, USA. Emerg Infect Dis. 2016 08; 22(8):1480-4.
Langelier C, Reid MJ, Halabi C, Witek N, LaRiviere A, Shah M, Wilson MR, Chin-Hong P, Douglas V, Kazacos KR, Babik JM. PMID: 27434260.
View in: PubMed Mentions: 2 Fields: Translation: HumansAnimals
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Broad-range PCR for early diagnosis of nosocomial Enterococcus gallinarum meningitis. Infect Dis (Lond). 2016 Aug; 48(8):640-2.
Su PY, Miller S, Rutishauser RL, Babik J. PMID: 27097275.
View in: PubMed Mentions: 1 Fields: Translation: HumansCells
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Epstein-Barr virus encephalitis in a renal transplant recipient manifesting as hemorrhagic, ring-enhancing mass lesions. Transpl Infect Dis. 2015 Oct; 17(5):744-50.
Babik JM, Katrak S, Miller S, Shah M, Chin-Hong P. PMID: 26252540.
View in: PubMed Mentions: 2 Fields: Translation: Humans
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Transplant tourism: understanding the risks. Curr Infect Dis Rep. 2015 Apr; 17(4):473.
Babik JM, Chin-Hong P. PMID: 25870141.
View in: PubMed Mentions:
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The human fetal immune response to hepatitis C virus exposure in utero. J Infect Dis. 2011 Jan 15; 203(2):196-206.
Babik JM, Cohan D, Monto A, Hartigan-O'Connor DJ, McCune JM. PMID: 21288819.
View in: PubMed Mentions: 14 Fields: Translation: HumansCells
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Impact of highly active antiretroviral therapy and immunologic status on hepatitis C virus quasispecies diversity in human immunodeficiency virus/hepatitis C virus-coinfected patients. J Virol. 2003 Feb; 77(3):1940-50.
Babik JM, Holodniy M. PMID: 12525628.
View in: PubMed Mentions: 19 Fields: Translation: HumansCells
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The role of Sp1 and NF-kappa B in regulating CD40 gene expression. J Biol Chem. 2002 Mar 15; 277(11):8890-7.
Tone M, Tone Y, Babik JM, Lin CY, Waldmann H. PMID: 11751910.
View in: PubMed Mentions: 24 Fields: Translation: Cells
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Expression of murine IL-12 is regulated by translational control of the p35 subunit. J Immunol. 1999 Apr 01; 162(7):4069-78.
Babik JM, Adams E, Tone Y, Fairchild PJ, Tone M, Waldmann H. PMID: 10201930.
View in: PubMed Mentions: 17 Fields: Translation: AnimalsCells
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Structure and chromosomal location of the mouse interleukin-12 p35 and p40 subunit genes. Eur J Immunol. 1996 Jun; 26(6):1222-7.
Tone Y, Thompson SA, Babik JM, Nolan KF, Tone M, Raven C, Waldmann H. PMID: 8647196.
View in: PubMed Mentions: 18 Fields: Translation: AnimalsCells
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Protein design by binary patterning of polar and nonpolar amino acids. Science. 1993 Dec 10; 262(5140):1680-5.
Kamtekar S, Schiffer JM, Xiong H, Babik JM, Hecht MH. PMID: 8259512.
View in: PubMed Mentions: 172 Fields: Translation: Cells
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Year | Publications |
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1993 | 1 | 1996 | 1 | 1999 | 1 | 2001 | 1 | 2003 | 1 | 2011 | 1 | 2015 | 2 | 2016 | 3 | 2017 | 2 | 2018 | 4 | 2019 | 7 | 2020 | 18 |
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Note that an individual publication can be assigned to more than one field. As a result, the publication counts in this graph might add up to more than the number of publications the person has written.
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This graph shows the number and percent of publications by field.
Fields are based on how the National Library of Medicine (NLM) classifies the publications' journals and might not represent the specific topics of the publications.
Note that an individual publication can be assigned to more than one field. As a result, the publication counts in this graph might add up to more than the number of publications the person has written.
To see the data as text, click here.
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