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Tomasz Nowakowski, PhD

Photo of Tomasz Nowakowski, PhD
Title(s)Associate Professor, Neurological Surgery
SchoolSchool of Medicine
PronounsHe/Him/His
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Using the linear references from the pangenome to discover missing autism variants. Nat Commun. 2026 Jan 23; 17(1):1681. Sui Y, Lin J, Noyes MD, Kwon Y, Wong I, Koundinya N, Harvey WT, Wu M, Hoekzema K, Munson KM, Garcia GH, Knuth J, Wertz J, Wang T, Hennick K, Karunakaran D, Polo Prieto RA, Meyer-Schuman R, Cherry F, Pehlivan D, Suter B, Gustafson JA, Miller DE, Human Pangenome Reference Consortium (HPRC), Berk-Rauch H, Nowakowski TJ, Chakravarti A, Zoghbi HY, Eichler EE. PMID: 41577710; PMCID: PMC12909954.
      View in: PubMed   Mentions:
    2. Dissecting gene regulatory networks governing human cortical cell fate. Nature. 2026 Jan 21. Ding JW, Kim CN, Ostrowski MS, Abeykoon Y, Pavlovic BJ, Wallace JL, Schaefer NK, Nowakowski TJ, Pollen AA. PMID: 41565813.
      View in: PubMed   Mentions:    Fields:    
    3. Microscale maps of bursting dynamics across human hippocampal slices from patients with epilepsy. J Neurophysiol. 2026 Jan 01; 135(1):273-285. Elliott MAT, Andrews JP, van der Molen T, Geng J, Spaeth A, Toledo A, Voitiuk K, Core C, Gillespie T, Sinervo A, Parks DF, Robbins A, Solís D, Chang EF, Nowakowski TJ, Teodorescu M, Haussler D, Sharf T. PMID: 41385612; PMCID: PMC12931417.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    4. Genetic and Cortical Cell-Type Liability Architecture of Autism. bioRxiv. 2025 Dec 12. Renne T, Benitière F, Poulain C, Dubuc A, Bourque VR, Huguet G, Nowakowski T, Jacquemont S. PMID: 41415448; PMCID: PMC12710640.
      View in: PubMed   Mentions:
    5. G-protein-coupled receptor ADGRG1 drives a protective microglial state in Alzheimer's disease through MYC activation. Neuron. 2025 Nov 19; 113(22):3876. Zhu B, Wangzhou A, Yu D, Li T, Schmidt R, De Florencio SL, Chao L, Thurber AL, Zhou M, Msheik Z, Perez Y, Grinberg LT, Spina S, Ransohoff RM, Kriegstein AR, Seeley WW, Nowakowski T, Piao X. PMID: 41175871.
      View in: PubMed   Mentions:
    6. Disruption of Cell-Type-Specific Molecular Programs of Medium Spiny Neurons in Autism. bioRxiv. 2025 Nov 07. Yuan G, Suresh V, Wigdor E, Hao Y, Leonard R, Steyert M, Griffiths M, Evans C, Rohani N, Weiss J, Lassen FH, Schafer N, Dong S, Palmer DS, Sanders SJ, Nowakowski TJ. PMID: 41279076; PMCID: PMC12637482.
      View in: PubMed   Mentions:
    7. A spatial transcriptomic atlas of autism-associated genes identifies convergence in the developing human thalamus. bioRxiv. 2025 Nov 06. Aivazidis A, Memi F, Rademaker K, Koko M, Roberts K, Trinh A, Petryszak R, Kleshchevnikov V, Tuck L, Lisgo S, Li T, Makarchuk S, Prete M, Nowakowski TJ, Martin HC, Bayraktar OA. PMID: 41279531; PMCID: PMC12637553.
      View in: PubMed   Mentions:
    8. Lineage-resolved atlas of the developing human cortex. Nature. 2025 Nov; 647(8088):194-202. Keefe MG, Steyert MR, Nowakowski TJ. PMID: 41193842; PMCID: PMC12589122.
      View in: PubMed   Mentions:
    9. The new frontier in understanding human and mammalian brain development. Nature. 2025 Nov; 647(8088):51-59. Nowakowski TJ, Nano PR, Matho KS, Chen X, Corrigan EK, Ding W, Gao Y, Heffel M, Jayakumar J, Kaplan HS, Kronman FN, Kovner R, Mannens CCA, Song M, Steyert MR, Venkatesan S, Wallace JL, Wang L, Werner JM, Zhang D, Yuan G, Zuo G, Ament SA, Colantuoni C, Dulac C, Fan R, Gillis J, Kriegstein AR, Krienen FM, Kim Y, Linnarsson S, Mitra PP, Pollen AA, Sestan N, Tward DJ, van Velthoven CTJ, Yao Z, Bhaduri A, Zeng H. PMID: 41193845.
      View in: PubMed   Mentions:
    10. Accelerated Tempo of Cortical Neurogenesis in Down Syndrome. bioRxiv. 2025 Sep 29. Ding JW, Kim CN, Steyert MR, Yuan AT, Shin D, Ivanov D, Nowakowski TJ, Pollen AA. PMID: 41256555; PMCID: PMC12621896.
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    11. Dissecting Gene Regulatory Networks Governing Human Cortical Cell Fate. bioRxiv. 2025 Sep 23. Ding JW, Kim CN, Ostrowski MS, Abeykoon Y, Pavlovic BJ, Wallace JL, Nowakowski TJ, Pollen AA. PMID: 41040362; PMCID: PMC12485932.
      View in: PubMed   Mentions:
    12. Sex differences in the developing human cortex intersect with genetic risk of neurodevelopmental disorders. bioRxiv. 2025 Sep 04. Hennick K, Sui Y, Karunakaran D, Nicollela A, Leonard R, Meyer-Schuman R, Berk-Rauch H, Wang T, Chakravarti A, Zoghbi HY, Eichler EE, Nowakowski TJ. PMID: 40950053; PMCID: PMC12424995.
      View in: PubMed   Mentions:
    13. Stress relaxing granular bioprinting materials enable complex and uniform organoid self-organization. bioRxiv. 2025 Sep 04. Graham AJ, Khoo MWL, Srivastava V, Viragova S, Kim H, Parekh K, Hennick KM, Bird M, Goldhammer N, Yu JZ, Hu G, Brinkley NT, Pardo L, Amaya JS, Morley CD, Chadha N, Lebel P, Kumar S, Rosenbluth JM, Nowakowski TJ, Chaudhuri O, Klein O, Gómez-Sjöberg R, Gartner ZJ. PMID: 38370663; PMCID: PMC10871257.
      View in: PubMed   Mentions:
    14. Microglia regulate GABAergic neurogenesis in prenatal human brain through IGF1. Nature. 2025 Oct; 646(8085):676-686. Yu D, Jain S, Wangzhou A, Zhu B, Shao W, Coley-O'Rourke EJ, De Florencio S, Kim J, Choi JJ, Paredes MF, Nowakowski TJ, Huang EJ, Piao X. PMID: 40770097; PMCID: PMC12527950.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansCells
    15. G-protein-coupled receptor ADGRG1 drives a protective microglial state in Alzheimer's disease through MYC activation. Neuron. 2025 Oct 01; 113(19):3224-3242.e7. Zhu B, Wangzhou A, Yu D, Li T, Schmidt R, De Florencio SL, Chao L, Thurber AL, Zhou M, Msheik Z, Perez Y, Grinberg LT, Spina S, Ransohoff RM, Kriegstein AR, Seeley WW, Nowakowski T, Piao X. PMID: 40713954; PMCID: PMC12616628.
      View in: PubMed   Mentions:    Fields:    
    16. Molecular Signatures in Cortical Development. Annu Rev Neurosci. 2025 07; 48(1):445-464. Steyert MR, Li T, Piao X, Nowakowski TJ. PMID: 40670292.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansAnimalsCells
    17. Engrafted nitrergic neurons derived from hPSCs improve gut dysmotility in mice. Nature. 2025 Sep; 645(8079):158-167. Majd H, Samuel RM, Cesiulis A, Ramirez JT, Kalantari A, Barber K, Farahvashi S, Ghazizadeh Z, Majd A, Chemel AK, Richter MN, Das S, Bendrick JL, Keefe MG, Wang J, Shiv RK, Bhat S, Khoroshkin M, Yu J, Nowakowski TJ, Wen KW, Goodarzi H, Thapar N, Kaltschmidt JA, McCann CJ, Fattahi F. PMID: 40562934; PMCID: PMC12408359.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    18. Ciliary biology intersects autism and congenital heart disease. Development. 2025 Jun 15; 152(12). Teerikorpi N, McCluskey KE, Bader E, Lasser MC, Wang S, Nguyen CH, Schmidt JD, Kostyanovskaya E, Sun N, Dea J, Nowakowski TJ, Willsey AJ, Willsey HR. PMID: 40552535; PMCID: PMC12273630.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansAnimalsCells
    19. Neutrophil extracellular traps-related markers in chronic limb threatening ischemia - a relation with progression and prognosis. Thromb Res. 2025 Aug; 252:109378. Nowakowski T, Malinowski K, Natorska J, Undas A. PMID: 40499486.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    20. An enhancer-AAV toolbox to target and manipulate distinct interneuron subtypes. Neuron. 2025 May 21; 113(10):1525-1547.e15. Furlanis E, Dai M, Leyva Garcia B, Tran T, Vergara J, Pereira A, Gorissen BL, Wills S, Vlachos A, Hairston A, Dwivedi D, Du S, McMahon J, Huang S, Morabito A, Vazquez A, Kim S, Lee AT, Chang EF, Razzaq T, Qazi A, Vargish G, Yuan X, Caccavano A, Hunt S, Chittajallu R, McLean N, Hewitt L, Paranzino E, Rice H, Cummins AC, Plotnikova A, Mohanty A, Tangen AC, Shin JH, Azadi R, Eldridge MAG, Alvarez VA, Averbeck BB, Alyahyay M, Vallejo TR, Soheib M, Vattino LG, MacGregor CP, Chatain CP, Banks E, Olah VJ, Naskar S, Hill S, Liebergall S, Badiani R, Hyde L, Hanley E, Xu Q, Allaway KC, Goldberg EM, Rowan MJM, Nowakowski TJ, Lee S, Favuzzi E, Kaeser PS, Sjulson L, Batista-Brito R, Takesian AE, Ibrahim LA, Iqbal A, Pelkey KA, McBain CJ, Dimidschstein J, Fishell G, Wang Y. PMID: 40403705.
      View in: PubMed   Mentions: 17     Fields:    Translation:AnimalsCells
    21. An enhancer-AAV toolbox to target and manipulate distinct interneuron subtypes. bioRxiv. 2025 Apr 22. Furlanis E, Dai M, Garcia BL, Tran T, Vergara J, Pereira A, Gorissen BL, Vlachos A, Hairston A, Dwivedi D, Du S, McMahon J, Huang S, Morabito A, Vazquez A, Kim S, Lee AT, Chang EF, Razzaq T, Qazi A, Vargish G, Yuan X, Caccavano A, Hunt S, Chittajallu R, McLean N, Hewitt L, Paranzino E, Rice H, Cummins AC, Plotnikova A, Mohanty A, Tangen AC, Shin JH, Azadi R, Eldridge MAG, Alvarez VA, Averbeck BB, Alyahyay M, Vallejo TR, Soheib M, Vattino LG, MacGregor CP, Chatain CP, Banks E, Olah VJ, Naskar S, Hill S, Liebergall S, Badiani R, Hyde L, Hanley E, Xu Q, Allaway KC, Goldberg EM, Rowan MJM, Nowakowski TJ, Lee S, Favuzzi E, Kaeser PS, Sjulson L, Batista-Brito R, Takesian AE, Ibrahim LA, Iqbal A, Pelkey KA, McBain CJ, Dimidschstein J, Fishell G, Wang Y. PMID: 39091835; PMCID: PMC11291062.
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    22. CRISPRi-based screen of autism spectrum disorder risk genes in microglia uncovers roles of ADNP in microglia endocytosis and synaptic pruning. Mol Psychiatry. 2025 Sep; 30(9):4176-4193. Teter OM, McQuade A, Hagan V, Liang W, Dräger NM, Sattler SM, Holmes BB, Castillo VC, Papakis V, Leng K, Boggess S, Nowakowski TJ, Wells J, Kampmann M. PMID: 40188316; PMCID: PMC12339388.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    23. Exploring human brain development and disease using assembloids. Neuron. 2025 Apr 16; 113(8):1133-1150. Wu SR, Nowakowski TJ. PMID: 40107269; PMCID: PMC12022838.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansAnimals
    24. Pathological microcircuits and epileptiform events in patient hippocampal slices. bioRxiv. 2025 Mar 18. Elliott MAT, Andrews JP, van der Molen T, Geng J, Spaeth A, Toledo A, Voitiuk K, Core C, Gillespie T, Sinervo A, Parks DF, Robbins A, Solís D, Chang EF, Nowakowski TJ, Teodorescu M, Haussler D, Sharf T. PMID: 39605666; PMCID: PMC11601452.
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    25. Low-dose rivaroxaban added to aspirin decreases thrombin generation but does not affect fibrin clot properties: a preliminary study. Pol Arch Intern Med. 2025 03 12; 135(3). Nowakowski T, Undas KW, Undas A. PMID: 40072879.
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    26. Author Correction: Opportunities and challenges of single-cell and spatially resolved genomics methods for neuroscience discovery. Nat Neurosci. 2025 Jan; 28(1):216. Bonev B, Castelo-Branco G, Chen F, Codeluppi S, Corces MR, Fan J, Heiman M, Harris K, Inoue F, Kellis M, Levine A, Lotfollahi M, Luo C, Maynard KR, Nitzan M, Ramani V, Satijia R, Schirmer L, Shen Y, Sun N, Green GS, Theis F, Wang X, Welch JD, Gokce O, Konopka G, Liddelow S, Macosko E, Ali Bayraktar O, Habib N, Nowakowski TJ. PMID: 39681663; PMCID: PMC12138952.
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    27. Multiscale Cloud-Based Pipeline for Neuronal Electrophysiology Analysis and Visualization. bioRxiv. 2024 Dec 14. Geng J, Voitiuk K, Parks DF, Robbins A, Spaeth A, Sevetson JL, Hernandez S, Schweiger HE, Andrews JP, Seiler ST, Elliott MAT, Chang EF, Nowakowski TJ, Currie R, Mostajo-Radji MA, Haussler D, Sharf T, Salama SR, Teodorescu M. PMID: 39605518; PMCID: PMC11601321.
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    28. High-Complexity Barcoded Rabies Virus for Scalable Circuit Mapping Using Single-Cell and Single-Nucleus Sequencing. bioRxiv. 2024 Dec 11. Shin D, Urbanek ME, Larson HH, Moussa AJ, Lee KY, Baker DL, Standen-Bloom E, Ramachandran S, Bogdanoff D, Cadwell CR, Nowakowski TJ. PMID: 39713304; PMCID: PMC11661106.
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    29. Applying single-cell and single-nucleus genomics to studies of cellular heterogeneity and cell fate transitions in the nervous system. Nat Neurosci. 2024 Dec; 27(12):2278-2291. Adameyko I, Bakken T, Bhaduri A, Chhatbar C, Filbin MG, Gate D, Hochgerner H, Kim CN, Krull J, La Manno G, Li Q, Linnarsson S, Ma Q, Mayer C, Menon V, Nano P, Prinz M, Quake S, Walsh CA, Yang J, Bayraktar OA, Gokce O, Habib N, Konopka G, Liddelow SA, Nowakowski TJ. PMID: 39627588; PMCID: PMC11949301.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansAnimalsCells
    30. Opportunities and challenges of single-cell and spatially resolved genomics methods for neuroscience discovery. Nat Neurosci. 2024 Dec; 27(12):2292-2309. Bonev B, Castelo-Branco G, Chen F, Codeluppi S, Corces MR, Fan J, Heiman M, Harris K, Inoue F, Kellis M, Levine A, Lotfollahi M, Luo C, Maynard KR, Nitzan M, Ramani V, Satijia R, Schirmer L, Shen Y, Sun N, Green GS, Theis F, Wang X, Welch JD, Gokce O, Konopka G, Liddelow S, Macosko E, Ali Bayraktar O, Habib N, Nowakowski TJ. PMID: 39627587; PMCID: PMC11999325.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansAnimals
    31. Implementation and validation of single-cell genomics experiments in neuroscience. Nat Neurosci. 2024 Dec; 27(12):2310-2325. Colonna M, Konopka G, Liddelow SA, Nowakowski T, Awatramani R, Bateup HS, Cadwell CR, Caglayan E, Chen JL, Gillis J, Kampmann M, Krienen F, Marsh SE, Monje M, O'Dea MR, Patani R, Pollen AA, Quintana FJ, Scavuzzo M, Schmitz M, Sloan SA, Tesar PJ, Tollkuhn J, Tosches MA, Urbanek ME, Werner JM, Bayraktar OA, Gokce O, Habib N. PMID: 39627589.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansAnimalsCells
    32. An organotypic atlas of human vascular cells. Nat Med. 2024 Dec; 30(12):3468-3481. Barnett SN, Cujba AM, Yang L, Maceiras AR, Li S, Kedlian VR, Pett JP, Polanski K, Miranda AMA, Xu C, Cranley J, Kanemaru K, Lee M, Mach L, Perera S, Tudor C, Joseph PD, Pritchard S, Toscano-Rivalta R, Tuong ZK, Bolt L, Petryszak R, Prete M, Cakir B, Huseynov A, Sarropoulos I, Chowdhury RA, Elmentaite R, Madissoon E, Oliver AJ, Campos L, Brazovskaja A, Gomes T, Treutlein B, Kim CN, Nowakowski TJ, Meyer KB, Randi AM, Noseda M, Teichmann SA. PMID: 39566559; PMCID: PMC11645277.
      View in: PubMed   Mentions: 24     Fields:    Translation:HumansCells
    33. CRISPRi-based screen of Autism Spectrum Disorder risk genes in microglia uncovers roles of ADNP in microglia endocytosis and synaptic pruning. bioRxiv. 2024 Nov 17. Teter OM, McQuade A, Hagan V, Liang W, Dräger NM, Sattler SM, Holmes BB, Castillo VC, Papakis V, Leng K, Boggess S, Nowakowski TJ, Wells J, Kampmann M. PMID: 39605704; PMCID: PMC11601228.
      View in: PubMed   Mentions:
    34. Multimodal evaluation of network activity and optogenetic interventions in human hippocampal slices. Nat Neurosci. 2024 Dec; 27(12):2487-2499. Andrews JP, Geng J, Voitiuk K, Elliott MAT, Shin D, Robbins A, Spaeth A, Wang A, Li L, Solis D, Keefe MG, Sevetson JL, Rivera de Jesús JA, Donohue KC, Larson HH, Ehrlich D, Auguste KI, Salama S, Sohal V, Sharf T, Haussler D, Cadwell CR, Schaffer DV, Chang EF, Teodorescu M, Nowakowski TJ. PMID: 39548326; PMCID: PMC11881784.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansCells
    35. Group 2 innate lymphoid cells promote inhibitory synapse development and social behavior. Science. 2024 11; 386(6721):eadi1025. Barron JJ, Mroz NM, Taloma SE, Dahlgren MW, Ortiz-Carpena JF, Keefe MG, Escoubas CC, Dorman LC, Vainchtein ID, Chiaranunt P, Kotas ME, Nowakowski TJ, Bender KJ, Molofsky AB, Molofsky AV. PMID: 39480923; PMCID: PMC11995778.
      View in: PubMed   Mentions: 8     Fields:    Translation:AnimalsCells
    36. Microglia regulate GABAergic neurogenesis in prenatal human brain through IGF1. bioRxiv. 2024 Oct 20. Yu D, Jain S, Wangzhou A, De Florencio S, Zhu B, Kim JY, Choi JJ, Paredes MF, Nowakowski TJ, Huang EJ, Piao X. PMID: 39464051; PMCID: PMC11507959.
      View in: PubMed   Mentions:
    37. Adhesion G protein-coupled receptor ADGRG1 promotes protective microglial response in Alzheimer's disease. bioRxiv. 2024 Oct 18. Zhu B, Wangzhou A, Yu D, Li T, Schmidt R, De Florencio SL, Chao L, Perez Y, Grinberg LT, Spina S, Ransohoff RM, Kriegstein AR, Seeley WW, Nowakowski T, Piao X. PMID: 39464012; PMCID: PMC11507791.
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    38. Temporally distinct 3D multi-omic dynamics in the developing human brain. Nature. 2024 Nov; 635(8038):481-489. Heffel MG, Zhou J, Zhang Y, Lee DS, Hou K, Pastor-Alonso O, Abuhanna KD, Galasso J, Kern C, Tai CY, Garcia-Padilla C, Nafisi M, Zhou Y, Schmitt AD, Li T, Haeussler M, Wick B, Zhang MJ, Xie F, Ziffra RS, Mukamel EA, Eskin E, Nowakowski TJ, Dixon JR, Pasaniuc B, Ecker JR, Zhu Q, Bintu B, Paredes MF, Luo C. PMID: 39385032; PMCID: PMC11560841.
      View in: PubMed   Mentions: 19     Fields:    Translation:HumansCells
    39. Single-cell multidimensional profiling of tumor cell heterogeneity in supratentorial ependymomas. bioRxiv. 2024 Aug 09. Jeong D, Danielli SG, Maaß KK, Ghasemi DR, Tetzlaff SK, Reyhan E, Oliveira de Biagi-Junior CA, Neyazi S, Nascimento A, Haase R, Lo Cascio C, Englinger B, Jiang L, Nguyen CM, Baumgartner AC, Castellani S, Rozowsky JS, Hack OA, Shaw ML, Lotsch-Gojo D, Bruckner K, Pfister SM, Kool M, Nowakowski TJ, Gojo J, Baird L, Alexandrescu S, Pajtler KW, Venkataramani V, Filbin MG. PMID: 41738029; PMCID: PMC12927524.
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    40. Ciliary biology intersects autism and congenital heart disease. bioRxiv. 2024 Jul 31. Teerikorpi N, Lasser MC, Wang S, Kostyanovskaya E, Bader E, Sun N, Dea J, Nowakowski TJ, Willsey AJ, Willsey HR. PMID: 39131273; PMCID: PMC11312554.
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    41. Elevated plasma factor XI is associated with postthrombotic syndrome. Thromb Res. 2024 09; 241:109086. Stepien K, Siudut J, Zalewski J, Nowakowski T, Undas A. PMID: 38968817.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    42. Large-scale neurophysiology and single-cell profiling in human neuroscience. Nature. 2024 Jun; 630(8017):587-595. Lee AT, Chang EF, Paredes MF, Nowakowski TJ. PMID: 38898291; PMCID: PMC12049086.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansAnimalsCells
    43. Massively parallel characterization of regulatory elements in the developing human cortex. Science. 2024 05 24; 384(6698):eadh0559. Deng C, Whalen S, Steyert M, Ziffra R, Przytycki PF, Inoue F, Pereira DA, Capauto D, Norton S, Vaccarino FM, PsychENCODE Consortium‡, Pollen AA, Nowakowski TJ, Ahituv N, Pollard KS, PsychENCODE Consortium. PMID: 38781390; PMCID: PMC12085231.
      View in: PubMed   Mentions: 21     Fields:    Translation:HumansCells
    44. A data-driven single-cell and spatial transcriptomic map of the human prefrontal cortex. Science. 2024 05 24; 384(6698):eadh1938. Huuki-Myers LA, Spangler A, Eagles NJ, Montgomery KD, Kwon SH, Guo B, Grant-Peters M, Divecha HR, Tippani M, Sriworarat C, Nguyen AB, Ravichandran P, Tran MN, Seyedian A, PsychENCODE Consortium†, Hyde TM, Kleinman JE, Battle A, Page SC, Ryten M, Hicks SC, Martinowich K, Collado-Torres L, Maynard KR, PsychENCODE Consortium. PMID: 38781370; PMCID: PMC11398705.
      View in: PubMed   Mentions: 29     Fields:    Translation:HumansCells
    45. Single-cell multi-cohort dissection of the schizophrenia transcriptome. Science. 2024 05 24; 384(6698):eadg5136. Ruzicka WB, Mohammadi S, Fullard JF, Davila-Velderrain J, Subburaju S, Tso DR, Hourihan M, Jiang S, Lee HC, Bendl J, PsychENCODE Consortium§, Voloudakis G, Haroutunian V, Hoffman GE, Roussos P, Kellis M, PsychENCODE Consortium. PMID: 38781388; PMCID: PMC12772489.
      View in: PubMed   Mentions: 50     Fields:    Translation:HumansCells
    46. Cross-ancestry atlas of gene, isoform, and splicing regulation in the developing human brain. Science. 2024 05 24; 384(6698):eadh0829. Wen C, Margolis M, Dai R, Zhang P, Przytycki PF, Vo DD, Bhattacharya A, Matoba N, Tang M, Jiao C, Kim M, Tsai E, Hoh C, Aygün N, Walker RL, Chatzinakos C, Clarke D, Pratt H, PsychENCODE Consortium†, Peters MA, Gerstein M, Daskalakis NP, Weng Z, Jaffe AE, Kleinman JE, Hyde TM, Weinberger DR, Bray NJ, Sestan N, Geschwind DH, Roeder K, Gusev A, Pasaniuc B, Stein JL, Love MI, Pollard KS, Liu C, Gandal MJ, PsychENCODE Consortium. PMID: 38781368; PMCID: PMC12147038.
      View in: PubMed   Mentions: 32     Fields:    Translation:HumansCells
    47. Single-cell genomics and regulatory networks for 388 human brains. Science. 2024 05 24; 384(6698):eadi5199. Emani PS, Liu JJ, Clarke D, Jensen M, Warrell J, Gupta C, Meng R, Lee CY, Xu S, Dursun C, Lou S, Chen Y, Chu Z, Galeev T, Hwang A, Li Y, Ni P, Zhou X, PsychENCODE Consortium‡, Bakken TE, Bendl J, Bicks L, Chatterjee T, Cheng L, Cheng Y, Dai Y, Duan Z, Flaherty M, Fullard JF, Gancz M, Garrido-Martín D, Gaynor-Gillett S, Grundman J, Hawken N, Henry E, Hoffman GE, Huang A, Jiang Y, Jin T, Jorstad NL, Kawaguchi R, Khullar S, Liu J, Liu J, Liu S, Ma S, Margolis M, Mazariegos S, Moore J, Moran JR, Nguyen E, Phalke N, Pjanic M, Pratt H, Quintero D, Rajagopalan AS, Riesenmy TR, Shedd N, Shi M, Spector M, Terwilliger R, Travaglini KJ, Wamsley B, Wang G, Xia Y, Xiao S, Yang AC, Zheng S, Gandal MJ, Lee D, Lein ES, Roussos P, Sestan N, Weng Z, White KP, Won H, Girgenti MJ, Zhang J, Wang D, Geschwind D, Gerstein M, PsychENCODE Consortium. PMID: 38781369; PMCID: PMC11365579.
      View in: PubMed   Mentions: 44     Fields:    Translation:HumansCells
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    100. Outer Radial Glia-like Cancer Stem Cells Contribute to Heterogeneity of Glioblastoma. Cell Stem Cell. 2020 01 02; 26(1):48-63.e6. Bhaduri A, Di Lullo E, Jung D, Müller S, Crouch EE, Espinosa CS, Ozawa T, Alvarado B, Spatazza J, Cadwell CR, Wilkins G, Velmeshev D, Liu SJ, Malatesta M, Andrews MG, Mostajo-Radji MA, Huang EJ, Nowakowski TJ, Lim DA, Diaz A, Raleigh DR, Kriegstein AR. PMID: 31901251; PMCID: PMC7029801.
      View in: PubMed   Mentions: 193     Fields:    Translation:HumansCells
    101. Disruptive mutations in TANC2 define a neurodevelopmental syndrome associated with psychiatric disorders. Nat Commun. 2019 10 15; 10(1):4679. Guo H, Bettella E, Marcogliese PC, Zhao R, Andrews JC, Nowakowski TJ, Gillentine MA, Hoekzema K, Wang T, Wu H, Jangam S, Liu C, Ni H, Willemsen MH, van Bon BW, Rinne T, Stevens SJC, Kleefstra T, Brunner HG, Yntema HG, Long M, Zhao W, Hu Z, Colson C, Richard N, Schwartz CE, Romano C, Castiglia L, Bottitta M, Dhar SU, Erwin DJ, Emrick L, Keren B, Afenjar A, Zhu B, Bai B, Stankiewicz P, Herman K, University of Washington Center for Mendelian Genomics, Mercimek-Andrews S, Juusola J, Wilfert AB, Abou Jamra R, Büttner B, Mefford HC, Muir AM, Scheffer IE, Regan BM, Malone S, Gecz J, Cobben J, Weiss MM, Waisfisz Q, Bijlsma EK, Hoffer MJV, Ruivenkamp CAL, Sartori S, Xia F, Rosenfeld JA, Bernier RA, Wangler MF, Yamamoto S, Xia K, Stegmann APA, Bellen HJ, Murgia A, Eichler EE. PMID: 31616000; PMCID: PMC6794285.
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    102. Development and Arealization of the Cerebral Cortex. Neuron. 2019 09 25; 103(6):980-1004. Cadwell CR, Bhaduri A, Mostajo-Radji MA, Keefe MG, Nowakowski TJ. PMID: 31557462; PMCID: PMC9245854.
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    103. Human brain development through the lens of cerebral organoid models. Brain Res. 2019 12 15; 1725:146470. Andrews MG, Nowakowski TJ. PMID: 31542572; PMCID: PMC6887101.
      View in: PubMed   Mentions: 17     Fields:    Translation:HumansAnimalsCells
    104. A recipe book for cell types in the human brain. Nature. 2019 09; 573(7772):36-37. Keefe MG, Nowakowski TJ. PMID: 31481767.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansAnimals
    105. Automated four-dimensional long term imaging enables single cell tracking within organotypic brain slices to study neurodevelopment and degeneration. Commun Biol. 2019; 2:155. Linsley JW, Tripathi A, Epstein I, Schmunk G, Mount E, Campioni M, Oza V, Barch M, Javaherian A, Nowakowski TJ, Samsi S, Finkbeiner S. PMID: 31069265; PMCID: PMC6494885.
      View in: PubMed   Mentions: 21  Translation:HumansAnimalsCells
    106. Multimodal Single-Cell Analysis Reveals Physiological Maturation in the Developing Human Neocortex. Neuron. 2019 04 03; 102(1):143-158.e7. Mayer S, Chen J, Velmeshev D, Mayer A, Eze UC, Bhaduri A, Cunha CE, Jung D, Arjun A, Li E, Alvarado B, Wang S, Lovegren N, Gonzales ML, Szpankowski L, Leyrat A, West JAA, Panagiotakos G, Alvarez-Buylla A, Paredes MF, Nowakowski TJ, Pollen AA, Kriegstein AR. PMID: 30770253; PMCID: PMC7648658.
      View in: PubMed   Mentions: 42     Fields:    Translation:HumansAnimalsCells
    107. Establishing Cerebral Organoids as Models of Human-Specific Brain Evolution. Cell. 2019 02 07; 176(4):743-756.e17. Pollen AA, Bhaduri A, Andrews MG, Nowakowski TJ, Meyerson OS, Mostajo-Radji MA, Di Lullo E, Alvarado B, Bedolli M, Dougherty ML, Fiddes IT, Kronenberg ZN, Shuga J, Leyrat AA, West JA, Bershteyn M, Lowe CB, Pavlovic BJ, Salama SR, Haussler D, Eichler EE, Kriegstein AR. PMID: 30735633; PMCID: PMC6544371.
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    108. Mafb and c-Maf Have Prenatal Compensatory and Postnatal Antagonistic Roles in Cortical Interneuron Fate and Function. Cell Rep. 2019 01 29; 26(5):1157-1173.e5. Pai EL, Vogt D, Clemente-Perez A, McKinsey GL, Cho FS, Hu JS, Wimer M, Paul A, Fazel Darbandi S, Pla R, Nowakowski TJ, Goodrich LV, Paz JT, Rubenstein JLR. PMID: 30699346; PMCID: PMC6602795.
      View in: PubMed   Mentions: 34     Fields:    Translation:AnimalsCells
    109. Neuroserpin expression during human brain development and in adult brain revealed by immunohistochemistry and single cell RNA sequencing. J Anat. 2019 09; 235(3):543-554. Adorjan I, Tyler T, Bhaduri A, Demharter S, Finszter CK, Bako M, Sebok OM, Nowakowski TJ, Khodosevich K, Møllgård K, Kriegstein AR, Shi L, Hoerder-Suabedissen A, Ansorge O, Molnár Z. PMID: 30644551; PMCID: PMC6704272.
      View in: PubMed   Mentions: 18     Fields:    Translation:Humans
    110. Regulation of cell-type-specific transcriptomes by microRNA networks during human brain development. Nat Neurosci. 2018 12; 21(12):1784-1792. Nowakowski TJ, Rani N, Golkaram M, Zhou HR, Alvarado B, Huch K, West JA, Leyrat A, Pollen AA, Kriegstein AR, Petzold LR, Kosik KS. PMID: 30455455; PMCID: PMC6312854.
      View in: PubMed   Mentions: 91     Fields:    Translation:HumansCells
    111. Single-cell sequencing paints diverse pictures of the brain. Nature. 2018 11; 563(7729):38-39. Bhaduri A, Nowakowski TJ. PMID: 30382219.
      View in: PubMed   Mentions: 1     Fields:    Translation:Cells
    112. Building blocks of the human brain. Science. 2018 Oct 12; 362(6411):169. Nowakowski TJ. PMID: 30309940.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    113. Identification of cell types in a mouse brain single-cell atlas using low sampling coverage. BMC Biol. 2018 10 11; 16(1):113. Bhaduri A, Nowakowski TJ, Pollen AA, Kriegstein AR. PMID: 30309354; PMCID: PMC6180488.
      View in: PubMed   Mentions: 9     Fields:    Translation:Animals
    114. Transcriptional fates of human-specific segmental duplications in brain. Genome Res. 2018 10; 28(10):1566-1576. Dougherty ML, Underwood JG, Nelson BJ, Tseng E, Munson KM, Penn O, Nowakowski TJ, Pollen AA, Eichler EE. PMID: 30228200; PMCID: PMC6169893.
      View in: PubMed   Mentions: 41     Fields:    Translation:HumansCells
    115. The Psychiatric Cell Map Initiative: A Convergent Systems Biological Approach to Illuminating Key Molecular Pathways in Neuropsychiatric Disorders. Cell. 2018 07 26; 174(3):505-520. Willsey AJ, Morris MT, Wang S, Willsey HR, Sun N, Teerikorpi N, Baum TB, Cagney G, Bender KJ, Desai TA, Srivastava D, Davis GW, Doudna J, Chang E, Sohal V, Lowenstein DH, Li H, Agard D, Keiser MJ, Shoichet B, von Zastrow M, Mucke L, Finkbeiner S, Gan L, Sestan N, Ward ME, Huttenhain R, Nowakowski TJ, Bellen HJ, Frank LM, Khokha MK, Lifton RP, Kampmann M, Ideker T, State MW, Krogan NJ. PMID: 30053424; PMCID: PMC6247911.
      View in: PubMed   Mentions: 75     Fields:    Translation:Humans
    116. Human-Specific NOTCH2NL Genes Affect Notch Signaling and Cortical Neurogenesis. Cell. 2018 05 31; 173(6):1356-1369.e22. Fiddes IT, Lodewijk GA, Mooring M, Bosworth CM, Ewing AD, Mantalas GL, Novak AM, van den Bout A, Bishara A, Rosenkrantz JL, Lorig-Roach R, Field AR, Haeussler M, Russo L, Bhaduri A, Nowakowski TJ, Pollen AA, Dougherty ML, Nuttle X, Addor MC, Zwolinski S, Katzman S, Kriegstein A, Eichler EE, Salama SR, Jacobs FMJ, Haussler D. PMID: 29856954; PMCID: PMC5986104.
      View in: PubMed   Mentions: 269     Fields:    Translation:HumansAnimalsCells
    117. An analytical framework for whole-genome sequence association studies and its implications for autism spectrum disorder. Nat Genet. 2018 04 26; 50(5):727-736. Werling DM, Brand H, An JY, Stone MR, Zhu L, Glessner JT, Collins RL, Dong S, Layer RM, Markenscoff-Papadimitriou E, Farrell A, Schwartz GB, Wang HZ, Currall BB, Zhao X, Dea J, Duhn C, Erdman CA, Gilson MC, Yadav R, Handsaker RE, Kashin S, Klei L, Mandell JD, Nowakowski TJ, Liu Y, Pochareddy S, Smith L, Walker MF, Waterman MJ, He X, Kriegstein AR, Rubenstein JL, Sestan N, McCarroll SA, Neale BM, Coon H, Willsey AJ, Buxbaum JD, Daly MJ, State MW, Quinlan AR, Marth GT, Roeder K, Devlin B, Talkowski ME, Sanders SJ. PMID: 29700473; PMCID: PMC5961723.
      View in: PubMed   Mentions: 164     Fields:    Translation:Humans
    118. Evolution of New miRNAs and Cerebro-Cortical Development. Annu Rev Neurosci. 2018 07 08; 41:119-137. Kosik KS, Nowakowski T. PMID: 29618285.
      View in: PubMed   Mentions: 23     Fields:    Translation:HumansAnimals
    119. Spatiotemporal gene expression trajectories reveal developmental hierarchies of the human cortex. Science. 2017 12 08; 358(6368):1318-1323. Nowakowski TJ, Bhaduri A, Pollen AA, Alvarado B, Mostajo-Radji MA, Di Lullo E, Haeussler M, Sandoval-Espinosa C, Liu SJ, Velmeshev D, Ounadjela JR, Shuga J, Wang X, Lim DA, West JA, Leyrat AA, Kent WJ, Kriegstein AR. PMID: 29217575; PMCID: PMC5991609.
      View in: PubMed   Mentions: 492     Fields:    Translation:HumansCells
    120. Human iPSC-Derived Cerebral Organoids Model Cellular Features of Lissencephaly and Reveal Prolonged Mitosis of Outer Radial Glia. Cell Stem Cell. 2017 04 06; 20(4):435-449.e4. Bershteyn M, Nowakowski TJ, Pollen AA, Di Lullo E, Nene A, Wynshaw-Boris A, Kriegstein AR. PMID: 28111201; PMCID: PMC5667944.
      View in: PubMed   Mentions: 297     Fields:    Translation:HumansCells
    121. The impact of microRNAs on transcriptional heterogeneity and gene co-expression across single embryonic stem cells. Nat Commun. 2017 01 19; 8:14126. Gambardella G, Carissimo A, Chen A, Cutillo L, Nowakowski TJ, di Bernardo D, Blelloch R. PMID: 28102192; PMCID: PMC5253645.
      View in: PubMed   Mentions: 22     Fields:    Translation:AnimalsCells
    122. Zika virus cell tropism in the developing human brain and inhibition by azithromycin. Proc Natl Acad Sci U S A. 2016 12 13; 113(50):14408-14413. Retallack H, Di Lullo E, Arias C, Knopp KA, Laurie MT, Sandoval-Espinosa C, Mancia Leon WR, Krencik R, Ullian EM, Spatazza J, Pollen AA, Mandel-Brehm C, Nowakowski TJ, Kriegstein AR, DeRisi JL. PMID: 27911847; PMCID: PMC5167169.
      View in: PubMed   Mentions: 288     Fields:    Translation:HumansCells
    123. Single-cell sequencing maps gene expression to mutational phylogenies in PDGF- and EGF-driven gliomas. Mol Syst Biol. 2016 Nov 25; 12(11):889. Müller S, Liu SJ, Di Lullo E, Malatesta M, Pollen AA, Nowakowski TJ, Kohanbash G, Aghi M, Kriegstein AR, Lim DA, Diaz A. PMID: 27888226; PMCID: PMC5147052.
      View in: PubMed   Mentions: 66     Fields:    Translation:Humans
    124. Transformation of the Radial Glia Scaffold Demarcates Two Stages of Human Cerebral Cortex Development. Neuron. 2016 Sep 21; 91(6):1219-1227. Nowakowski TJ, Pollen AA, Sandoval-Espinosa C, Kriegstein AR. PMID: 27657449; PMCID: PMC5087333.
      View in: PubMed   Mentions: 182     Fields:    Translation:HumansCells
    125. A Primate lncRNA Mediates Notch Signaling during Neuronal Development by Sequestering miRNA. Neuron. 2016 06 15; 90(6):1174-1188. Rani N, Nowakowski TJ, Zhou H, Godshalk SE, Lisi V, Kriegstein AR, Kosik KS. PMID: 27263970; PMCID: PMC4911262.
      View in: PubMed   Mentions: 78     Fields:    Translation:HumansAnimalsCells
    126. SCell: integrated analysis of single-cell RNA-seq data. Bioinformatics. 2016 07 15; 32(14):2219-20. Diaz A, Liu SJ, Sandoval C, Pollen A, Nowakowski TJ, Lim DA, Kriegstein A. PMID: 27153637; PMCID: PMC4937196.
      View in: PubMed   Mentions: 27     Fields:    
    127. Single-cell analysis of long non-coding RNAs in the developing human neocortex. Genome Biol. 2016 Apr 14; 17:67. Liu SJ, Nowakowski TJ, Pollen AA, Lui JH, Horlbeck MA, Attenello FJ, He D, Weissman JS, Kriegstein AR, Diaz AA, Lim DA. PMID: 27081004; PMCID: PMC4831157.
      View in: PubMed   Mentions: 190     Fields:    Translation:HumansCells
    128. Expression Analysis Highlights AXL as a Candidate Zika Virus Entry Receptor in Neural Stem Cells. Cell Stem Cell. 2016 05 05; 18(5):591-6. Nowakowski TJ, Pollen AA, Di Lullo E, Sandoval-Espinosa C, Bershteyn M, Kriegstein AR. PMID: 27038591; PMCID: PMC4860115.
      View in: PubMed   Mentions: 291     Fields:    Translation:AnimalsCells
    129. Molecular identity of human outer radial glia during cortical development. Cell. 2015 Sep 24; 163(1):55-67. Pollen AA, Nowakowski TJ, Chen J, Retallack H, Sandoval-Espinosa C, Nicholas CR, Shuga J, Liu SJ, Oldham MC, Diaz A, Lim DA, Leyrat AA, West JA, Kriegstein AR. PMID: 26406371; PMCID: PMC4583716.
      View in: PubMed   Mentions: 457     Fields:    Translation:HumansAnimalsCells
    130. The long noncoding RNA Pnky regulates neuronal differentiation of embryonic and postnatal neural stem cells. Cell Stem Cell. 2015 Apr 02; 16(4):439-447. Ramos AD, Andersen RE, Liu SJ, Nowakowski TJ, Hong SJ, Gertz C, Salinas RD, Zarabi H, Kriegstein AR, Lim DA. PMID: 25800779; PMCID: PMC4388801.
      View in: PubMed   Mentions: 206     Fields:    Translation:HumansAnimalsCells
    131. Radial glia require PDGFD-PDGFRβ signalling in human but not mouse neocortex. Nature. 2014 Nov 13; 515(7526):264-8. Lui JH, Nowakowski TJ, Pollen AA, Javaherian A, Kriegstein AR, Oldham MC. PMID: 25391964; PMCID: PMC4231536.
      View in: PubMed   Mentions: 96     Fields:    Translation:HumansAnimalsCells
    132. Low-coverage single-cell mRNA sequencing reveals cellular heterogeneity and activated signaling pathways in developing cerebral cortex. Nat Biotechnol. 2014 Oct; 32(10):1053-8. Pollen AA, Nowakowski TJ, Shuga J, Wang X, Leyrat AA, Lui JH, Li N, Szpankowski L, Fowler B, Chen P, Ramalingam N, Sun G, Thu M, Norris M, Lebofsky R, Toppani D, Kemp DW, Wong M, Clerkson B, Jones BN, Wu S, Knutsson L, Alvarado B, Wang J, Weaver LS, May AP, Jones RC, Unger MA, Kriegstein AR, West JA. PMID: 25086649; PMCID: PMC4191988.
      View in: PubMed   Mentions: 457     Fields:    Translation:HumansAnimalsCells
    133. Loss of functional Dicer in mouse radial glia cell-autonomously prolongs cortical neurogenesis. Dev Biol. 2013 Oct 15; 382(2):530-7. Nowakowski TJ, Mysiak KS, O'Leary T, Fotaki V, Pratt T, Price DJ. PMID: 24012747; PMCID: PMC3793872.
      View in: PubMed   Mentions: 12     Fields:    Translation:AnimalsCells
    134. MicroRNA-92b regulates the development of intermediate cortical progenitors in embryonic mouse brain. Proc Natl Acad Sci U S A. 2013 Apr 23; 110(17):7056-61. Nowakowski TJ, Fotaki V, Pollock A, Sun T, Pratt T, Price DJ. PMID: 23569256; PMCID: PMC3637761.
      View in: PubMed   Mentions: 63     Fields:    Translation:AnimalsCells
    135. The expression and activity of β-catenin in the thalamus and its projections to the cerebral cortex in the mouse embryo. BMC Neurosci. 2012 Feb 23; 13:20. Pratt T, Davey JW, Nowakowski TJ, Raasumaa C, Rawlik K, McBride D, Clinton M, Mason JO, Price DJ. PMID: 22360971; PMCID: PMC3347985.
      View in: PubMed   Mentions: 8     Fields:    Translation:AnimalsCells
    136. Functional dicer is necessary for appropriate specification of radial glia during early development of mouse telencephalon. PLoS One. 2011; 6(8):e23013. Nowakowski TJ, Mysiak KS, Pratt T, Price DJ. PMID: 21826226; PMCID: PMC3149632.
      View in: PubMed   Mentions: 31     Fields:    Translation:AnimalsCells
    137. Novel lines of Pax6-/- embryonic stem cells exhibit reduced neurogenic capacity without loss of viability. BMC Neurosci. 2010 Feb 24; 11:26. Quinn JC, Molinek M, Nowakowski TJ, Mason JO, Price DJ. PMID: 20178645; PMCID: PMC2837049.
      View in: PubMed   Mentions: 7     Fields:    Translation:AnimalsCells
    138. Time-Multiplexed Laguerre-Gaussian holographic optical tweezers for biological applications. Opt Express. 2006 Apr 03; 14(7):3065-72. Lafong A, Hossack WJ, Arlt J, Nowakowski TJ, Read ND. PMID: 19516447.
      View in: PubMed   Mentions: 3     Fields:    
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