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Tomasz Nowakowski, PhD

Photo of Tomasz Nowakowski, PhD
Title(s)Associate Professor, Neurological Surgery
SchoolSchool of Medicine
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Lineage-resolved atlas of the developing human cortex. Nature. 2025 Nov; 647(8088):194-202. Keefe MG, Steyert MR, Nowakowski TJ. PMID: 41193842.
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    2. The new frontier in understanding human and mammalian brain development. Nature. 2025 Nov; 647(8088):51-59. Nowakowski TJ, Nano PR, Matho KS, Chen X, Corrigan EK, Ding W, Gao Y, Heffel M, Jayakumar J, Kaplan HS, Kronman FN, Kovner R, Mannens CCA, Song M, Steyert MR, Venkatesan S, Wallace JL, Wang L, Werner JM, Zhang D, Yuan G, Zuo G, Ament SA, Colantuoni C, Dulac C, Fan R, Gillis J, Kriegstein AR, Krienen FM, Kim Y, Linnarsson S, Mitra PP, Pollen AA, Sestan N, Tward DJ, van Velthoven CTJ, Yao Z, Bhaduri A, Zeng H. PMID: 41193845.
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    3. Stress relaxing granular bioprinting materials enable complex and uniform organoid self-organization. bioRxiv. 2025 Sep 04. Graham AJ, Khoo MWL, Srivastava V, Viragova S, Kim H, Parekh K, Hennick KM, Bird M, Goldhammer N, Yu JZ, Hu G, Brinkley NT, Pardo L, Amaya JS, Morley CD, Chadha N, Lebel P, Kumar S, Rosenbluth JM, Nowakowski TJ, Chaudhuri O, Klein O, Gómez-Sjöberg R, Gartner ZJ. PMID: 38370663; PMCID: PMC10871257.
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    4. Sex differences in the developing human cortex intersect with genetic risk of neurodevelopmental disorders. bioRxiv. 2025 Sep 04. Hennick K, Sui Y, Karunakaran D, Nicollela A, Leonard R, Meyer-Schuman R, Berk-Rauch H, Wang T, Chakravarti A, Zoghbi HY, Eichler EE, Nowakowski TJ. PMID: 40950053; PMCID: PMC12424995.
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    5. Microglia regulate GABAergic neurogenesis in prenatal human brain through IGF1. Nature. 2025 Aug 06. Yu D, Jain S, Wangzhou A, Zhu B, Shao W, Coley-O'Rourke EJ, De Florencio S, Kim J, Choi JJ, Paredes MF, Nowakowski TJ, Huang EJ, Piao X. PMID: 40770097.
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    6. G-protein-coupled receptor ADGRG1 drives a protective microglial state in Alzheimer's disease through MYC activation. Neuron. 2025 Jul 23. Zhu B, Wangzhou A, Yu D, Li T, Schmidt R, De Florencio SL, Chao L, Thurber AL, Zhou M, Msheik Z, Perez Y, Grinberg LT, Spina S, Ransohoff RM, Kriegstein AR, Seeley WW, Nowakowski T, Piao X. PMID: 40713954.
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    7. Molecular Signatures in Cortical Development. Annu Rev Neurosci. 2025 Jul; 48(1):445-464. Steyert MR, Li T, Piao X, Nowakowski TJ. PMID: 40670292.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    8. Engrafted nitrergic neurons derived from hPSCs improve gut dysmotility in mice. Nature. 2025 Sep; 645(8079):158-167. Majd H, Samuel RM, Cesiulis A, Ramirez JT, Kalantari A, Barber K, Farahvashi S, Ghazizadeh Z, Majd A, Chemel AK, Richter MN, Das S, Bendrick JL, Keefe MG, Wang J, Shiv RK, Bhat S, Khoroshkin M, Yu J, Nowakowski TJ, Wen KW, Goodarzi H, Thapar N, Kaltschmidt JA, McCann CJ, Fattahi F. PMID: 40562934; PMCID: PMC12408359.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    9. Ciliary biology intersects autism and congenital heart disease. Development. 2025 Jun 15; 152(12). Teerikorpi N, McCluskey KE, Bader E, Lasser MC, Wang S, Nguyen CH, Schmidt JD, Kostyanovskaya E, Sun N, Dea J, Nowakowski TJ, Willsey AJ, Willsey HR. PMID: 40552535; PMCID: PMC12273630.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    10. Neutrophil extracellular traps-related markers in chronic limb threatening ischemia - a relation with progression and prognosis. Thromb Res. 2025 Aug; 252:109378. Nowakowski T, Malinowski K, Natorska J, Undas A. PMID: 40499486.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    11. An enhancer-AAV toolbox to target and manipulate distinct interneuron subtypes. Neuron. 2025 May 21; 113(10):1525-1547.e15. Furlanis E, Dai M, Leyva Garcia B, Tran T, Vergara J, Pereira A, Gorissen BL, Wills S, Vlachos A, Hairston A, Dwivedi D, Du S, McMahon J, Huang S, Morabito A, Vazquez A, Kim S, Lee AT, Chang EF, Razzaq T, Qazi A, Vargish G, Yuan X, Caccavano A, Hunt S, Chittajallu R, McLean N, Hewitt L, Paranzino E, Rice H, Cummins AC, Plotnikova A, Mohanty A, Tangen AC, Shin JH, Azadi R, Eldridge MAG, Alvarez VA, Averbeck BB, Alyahyay M, Vallejo TR, Soheib M, Vattino LG, MacGregor CP, Chatain CP, Banks E, Olah VJ, Naskar S, Hill S, Liebergall S, Badiani R, Hyde L, Hanley E, Xu Q, Allaway KC, Goldberg EM, Rowan MJM, Nowakowski TJ, Lee S, Favuzzi E, Kaeser PS, Sjulson L, Batista-Brito R, Takesian AE, Ibrahim LA, Iqbal A, Pelkey KA, McBain CJ, Dimidschstein J, Fishell G, Wang Y. PMID: 40403705.
      View in: PubMed   Mentions: 13     Fields:    Translation:AnimalsCells
    12. An enhancer-AAV toolbox to target and manipulate distinct interneuron subtypes. bioRxiv. 2025 Apr 22. Furlanis E, Dai M, Garcia BL, Tran T, Vergara J, Pereira A, Gorissen BL, Vlachos A, Hairston A, Dwivedi D, Du S, McMahon J, Huang S, Morabito A, Vazquez A, Kim S, Lee AT, Chang EF, Razzaq T, Qazi A, Vargish G, Yuan X, Caccavano A, Hunt S, Chittajallu R, McLean N, Hewitt L, Paranzino E, Rice H, Cummins AC, Plotnikova A, Mohanty A, Tangen AC, Shin JH, Azadi R, Eldridge MAG, Alvarez VA, Averbeck BB, Alyahyay M, Vallejo TR, Soheib M, Vattino LG, MacGregor CP, Chatain CP, Banks E, Olah VJ, Naskar S, Hill S, Liebergall S, Badiani R, Hyde L, Hanley E, Xu Q, Allaway KC, Goldberg EM, Rowan MJM, Nowakowski TJ, Lee S, Favuzzi E, Kaeser PS, Sjulson L, Batista-Brito R, Takesian AE, Ibrahim LA, Iqbal A, Pelkey KA, McBain CJ, Dimidschstein J, Fishell G, Wang Y. PMID: 39091835; PMCID: PMC11291062.
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    13. CRISPRi-based screen of autism spectrum disorder risk genes in microglia uncovers roles of ADNP in microglia endocytosis and synaptic pruning. Mol Psychiatry. 2025 Sep; 30(9):4176-4193. Teter OM, McQuade A, Hagan V, Liang W, Dräger NM, Sattler SM, Holmes BB, Castillo VC, Papakis V, Leng K, Boggess S, Nowakowski TJ, Wells J, Kampmann M. PMID: 40188316; PMCID: PMC12339388.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    14. Exploring human brain development and disease using assembloids. Neuron. 2025 Apr 16; 113(8):1133-1150. Wu SR, Nowakowski TJ. PMID: 40107269; PMCID: PMC12022838.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansAnimals
    15. Pathological microcircuits and epileptiform events in patient hippocampal slices. bioRxiv. 2025 Mar 18. Elliott MAT, Andrews JP, van der Molen T, Geng J, Spaeth A, Toledo A, Voitiuk K, Core C, Gillespie T, Sinervo A, Parks DF, Robbins A, Solís D, Chang EF, Nowakowski TJ, Teodorescu M, Haussler D, Sharf T. PMID: 39605666; PMCID: PMC11601452.
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    16. Low-dose rivaroxaban added to aspirin decreases thrombin generation but does not affect fibrin clot properties: a preliminary study. Pol Arch Intern Med. 2025 03 12; 135(3). Nowakowski T, Undas KW, Undas A. PMID: 40072879.
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    17. Author Correction: Opportunities and challenges of single-cell and spatially resolved genomics methods for neuroscience discovery. Nat Neurosci. 2025 Jan; 28(1):216. Bonev B, Castelo-Branco G, Chen F, Codeluppi S, Corces MR, Fan J, Heiman M, Harris K, Inoue F, Kellis M, Levine A, Lotfollahi M, Luo C, Maynard KR, Nitzan M, Ramani V, Satijia R, Schirmer L, Shen Y, Sun N, Green GS, Theis F, Wang X, Welch JD, Gokce O, Konopka G, Liddelow S, Macosko E, Ali Bayraktar O, Habib N, Nowakowski TJ. PMID: 39681663; PMCID: PMC12138952.
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    18. Multiscale Cloud-Based Pipeline for Neuronal Electrophysiology Analysis and Visualization. bioRxiv. 2024 Dec 14. Geng J, Voitiuk K, Parks DF, Robbins A, Spaeth A, Sevetson JL, Hernandez S, Schweiger HE, Andrews JP, Seiler ST, Elliott MAT, Chang EF, Nowakowski TJ, Currie R, Mostajo-Radji MA, Haussler D, Sharf T, Salama SR, Teodorescu M. PMID: 39605518; PMCID: PMC11601321.
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    19. High-Complexity Barcoded Rabies Virus for Scalable Circuit Mapping Using Single-Cell and Single-Nucleus Sequencing. bioRxiv. 2024 Dec 11. Shin D, Urbanek ME, Larson HH, Moussa AJ, Lee KY, Baker DL, Standen-Bloom E, Ramachandran S, Bogdanoff D, Cadwell CR, Nowakowski TJ. PMID: 39713304; PMCID: PMC11661106.
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    20. Implementation and validation of single-cell genomics experiments in neuroscience. Nat Neurosci. 2024 Dec; 27(12):2310-2325. Colonna M, Konopka G, Liddelow SA, Nowakowski T, Awatramani R, Bateup HS, Cadwell CR, Caglayan E, Chen JL, Gillis J, Kampmann M, Krienen F, Marsh SE, Monje M, O'Dea MR, Patani R, Pollen AA, Quintana FJ, Scavuzzo M, Schmitz M, Sloan SA, Tesar PJ, Tollkuhn J, Tosches MA, Urbanek ME, Werner JM, Bayraktar OA, Gokce O, Habib N. PMID: 39627589.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansAnimalsCells
    21. Opportunities and challenges of single-cell and spatially resolved genomics methods for neuroscience discovery. Nat Neurosci. 2024 Dec; 27(12):2292-2309. Bonev B, Castelo-Branco G, Chen F, Codeluppi S, Corces MR, Fan J, Heiman M, Harris K, Inoue F, Kellis M, Levine A, Lotfollahi M, Luo C, Maynard KR, Nitzan M, Ramani V, Satijia R, Schirmer L, Shen Y, Sun N, Green GS, Theis F, Wang X, Welch JD, Gokce O, Konopka G, Liddelow S, Macosko E, Ali Bayraktar O, Habib N, Nowakowski TJ. PMID: 39627587; PMCID: PMC11999325.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansAnimals
    22. Applying single-cell and single-nucleus genomics to studies of cellular heterogeneity and cell fate transitions in the nervous system. Nat Neurosci. 2024 Dec; 27(12):2278-2291. Adameyko I, Bakken T, Bhaduri A, Chhatbar C, Filbin MG, Gate D, Hochgerner H, Kim CN, Krull J, La Manno G, Li Q, Linnarsson S, Ma Q, Mayer C, Menon V, Nano P, Prinz M, Quake S, Walsh CA, Yang J, Bayraktar OA, Gokce O, Habib N, Konopka G, Liddelow SA, Nowakowski TJ. PMID: 39627588; PMCID: PMC11949301.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansAnimalsCells
    23. An organotypic atlas of human vascular cells. Nat Med. 2024 Dec; 30(12):3468-3481. Barnett SN, Cujba AM, Yang L, Maceiras AR, Li S, Kedlian VR, Pett JP, Polanski K, Miranda AMA, Xu C, Cranley J, Kanemaru K, Lee M, Mach L, Perera S, Tudor C, Joseph PD, Pritchard S, Toscano-Rivalta R, Tuong ZK, Bolt L, Petryszak R, Prete M, Cakir B, Huseynov A, Sarropoulos I, Chowdhury RA, Elmentaite R, Madissoon E, Oliver AJ, Campos L, Brazovskaja A, Gomes T, Treutlein B, Kim CN, Nowakowski TJ, Meyer KB, Randi AM, Noseda M, Teichmann SA. PMID: 39566559; PMCID: PMC11645277.
      View in: PubMed   Mentions: 14     Fields:    Translation:HumansCells
    24. CRISPRi-based screen of Autism Spectrum Disorder risk genes in microglia uncovers roles of ADNP in microglia endocytosis and synaptic pruning. bioRxiv. 2024 Nov 17. Teter OM, McQuade A, Hagan V, Liang W, Dräger NM, Sattler SM, Holmes BB, Castillo VC, Papakis V, Leng K, Boggess S, Nowakowski TJ, Wells J, Kampmann M. PMID: 39605704; PMCID: PMC11601228.
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    25. Multimodal evaluation of network activity and optogenetic interventions in human hippocampal slices. Nat Neurosci. 2024 Dec; 27(12):2487-2499. Andrews JP, Geng J, Voitiuk K, Elliott MAT, Shin D, Robbins A, Spaeth A, Wang A, Li L, Solis D, Keefe MG, Sevetson JL, Rivera de Jesús JA, Donohue KC, Larson HH, Ehrlich D, Auguste KI, Salama S, Sohal V, Sharf T, Haussler D, Cadwell CR, Schaffer DV, Chang EF, Teodorescu M, Nowakowski TJ. PMID: 39548326; PMCID: PMC11881784.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansCells
    26. Group 2 innate lymphoid cells promote inhibitory synapse development and social behavior. Science. 2024 11; 386(6721):eadi1025. Barron JJ, Mroz NM, Taloma SE, Dahlgren MW, Ortiz-Carpena JF, Keefe MG, Escoubas CC, Dorman LC, Vainchtein ID, Chiaranunt P, Kotas ME, Nowakowski TJ, Bender KJ, Molofsky AB, Molofsky AV. PMID: 39480923; PMCID: PMC11995778.
      View in: PubMed   Mentions: 8     Fields:    Translation:AnimalsCells
    27. Microglia regulate GABAergic neurogenesis in prenatal human brain through IGF1. bioRxiv. 2024 Oct 20. Yu D, Jain S, Wangzhou A, De Florencio S, Zhu B, Kim JY, Choi JJ, Paredes MF, Nowakowski TJ, Huang EJ, Piao X. PMID: 39464051; PMCID: PMC11507959.
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    28. Adhesion G protein-coupled receptor ADGRG1 promotes protective microglial response in Alzheimer's disease. bioRxiv. 2024 Oct 18. Zhu B, Wangzhou A, Yu D, Li T, Schmidt R, De Florencio SL, Chao L, Perez Y, Grinberg LT, Spina S, Ransohoff RM, Kriegstein AR, Seeley WW, Nowakowski T, Piao X. PMID: 39464012; PMCID: PMC11507791.
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    29. Temporally distinct 3D multi-omic dynamics in the developing human brain. Nature. 2024 Nov; 635(8038):481-489. Heffel MG, Zhou J, Zhang Y, Lee DS, Hou K, Pastor-Alonso O, Abuhanna KD, Galasso J, Kern C, Tai CY, Garcia-Padilla C, Nafisi M, Zhou Y, Schmitt AD, Li T, Haeussler M, Wick B, Zhang MJ, Xie F, Ziffra RS, Mukamel EA, Eskin E, Nowakowski TJ, Dixon JR, Pasaniuc B, Ecker JR, Zhu Q, Bintu B, Paredes MF, Luo C. PMID: 39385032; PMCID: PMC11560841.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansCells
    30. Ciliary biology intersects autism and congenital heart disease. bioRxiv. 2024 Jul 31. Teerikorpi N, Lasser MC, Wang S, Kostyanovskaya E, Bader E, Sun N, Dea J, Nowakowski TJ, Willsey AJ, Willsey HR. PMID: 39131273; PMCID: PMC11312554.
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    31. Elevated plasma factor XI is associated with postthrombotic syndrome. Thromb Res. 2024 Sep; 241:109086. Stepien K, Siudut J, Zalewski J, Nowakowski T, Undas A. PMID: 38968817.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    32. Large-scale neurophysiology and single-cell profiling in human neuroscience. Nature. 2024 Jun; 630(8017):587-595. Lee AT, Chang EF, Paredes MF, Nowakowski TJ. PMID: 38898291; PMCID: PMC12049086.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansAnimalsCells
    33. Massively parallel characterization of regulatory elements in the developing human cortex. Science. 2024 05 24; 384(6698):eadh0559. Deng C, Whalen S, Steyert M, Ziffra R, Przytycki PF, Inoue F, Pereira DA, Capauto D, Norton S, Vaccarino FM, PsychENCODE Consortium‡, Pollen AA, Nowakowski TJ, Ahituv N, Pollard KS, PsychENCODE Consortium. PMID: 38781390; PMCID: PMC12085231.
      View in: PubMed   Mentions: 21     Fields:    Translation:HumansCells
    34. Type-I-interferon-responsive microglia shape cortical development and behavior. Cell. 2024 Apr 11; 187(8):1936-1954.e24. Escoubas CC, Dorman LC, Nguyen PT, Lagares-Linares C, Nakajo H, Anderson SR, Barron JJ, Wade SD, Cuevas B, Vainchtein ID, Silva NJ, Guajardo R, Xiao Y, Lidsky PV, Wang EY, Rivera BM, Taloma SE, Kim DK, Kaminskaya E, Nakao-Inoue H, Schwer B, Arnold TD, Molofsky AB, Condello C, Andino R, Nowakowski TJ, Molofsky AV. PMID: 38490196; PMCID: PMC11015974.
      View in: PubMed   Mentions: 37     Fields:    Translation:AnimalsCells
    35. Thalamocortical organoids enable in vitro modeling of 22q11.2 microdeletion associated with neuropsychiatric disorders. Cell Stem Cell. 2024 03 07; 31(3):421-432.e8. Shin D, Kim CN, Ross J, Hennick KM, Wu SR, Paranjape N, Leonard R, Wang JC, Keefe MG, Pavlovic BJ, Donohue KC, Moreau C, Wigdor EM, Larson HH, Allen DE, Cadwell CR, Bhaduri A, Popova G, Bearden CE, Pollen AA, Jacquemont S, Sanders SJ, Haussler D, Wiita AP, Frost NA, Sohal VS, Nowakowski TJ. PMID: 38382530; PMCID: PMC10939828.
      View in: PubMed   Mentions: 12     Fields:    Translation:Humans
    36. A foundational atlas of autism protein interactions reveals molecular convergence. bioRxiv. 2024 Feb 08. Wang B, Vartak R, Zaltsman Y, Naing ZZC, Hennick KM, Polacco BJ, Bashir A, Eckhardt M, Bouhaddou M, Xu J, Sun N, Lasser MC, Zhou Y, McKetney J, Guiley KZ, Chan U, Kaye JA, Chadha N, Cakir M, Gordon M, Khare P, Drake S, Drury V, Burke DF, Gonzalez S, Alkhairy S, Thomas R, Lam S, Morris M, Bader E, Seyler M, Baum T, Krasnoff R, Wang S, Pham P, Arbalaez J, Pratt D, Chag S, Mahmood N, Rolland T, Bourgeron T, Finkbeiner S, Swaney DL, Bandyopadhay S, Ideker T, Beltrao P, Willsey HR, Obernier K, Nowakowski TJ, Hüttenhain R, State MW, Willsey AJ, Krogan NJ. PMID: 38076945; PMCID: PMC10705567.
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    37. Optimal trade-off control in machine learning-based library design, with application to adeno-associated virus (AAV) for gene therapy. Sci Adv. 2024 01 26; 10(4):eadj3786. Zhu D, Brookes DH, Busia A, Carneiro A, Fannjiang C, Popova G, Shin D, Donohue KC, Lin LF, Miller ZM, Williams ER, Chang EF, Nowakowski TJ, Listgarten J, Schaffer DV. PMID: 38266077; PMCID: PMC10807795.
      View in: PubMed   Mentions: 22     Fields:    Translation:HumansCells
    38. Improving cellular diversity in human cerebellar organoids. Cell Stem Cell. 2024 01 04; 31(1):3-4. Steyert M, Nowakowski T. PMID: 38181748.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimals
    39. Single-cell analysis of prenatal and postnatal human cortical development. Science. 2023 10 13; 382(6667):eadf0834. Velmeshev D, Perez Y, Yan Z, Valencia JE, Castaneda-Castellanos DR, Wang L, Schirmer L, Mayer S, Wick B, Wang S, Nowakowski TJ, Paredes M, Huang EJ, Kriegstein AR. PMID: 37824647; PMCID: PMC11005279.
      View in: PubMed   Mentions: 58     Fields:    Translation:HumansCells
    40. Spatiotemporal molecular dynamics of the developing human thalamus. Science. 2023 10 13; 382(6667):eadf9941. Kim CN, Shin D, Wang A, Nowakowski TJ. PMID: 37824646; PMCID: PMC10758299.
      View in: PubMed   Mentions: 19     Fields:    Translation:HumansCells
    41. Rubella virus tropism and single-cell responses in human primary tissue and microglia-containing organoids. Elife. 2023 07 20; 12. Popova G, Retallack H, Kim CN, Wang A, Shin D, DeRisi JL, Nowakowski T. PMID: 37470786; PMCID: PMC10370260.
      View in: PubMed   Mentions: 10     Fields:    Translation:HumansCells
    42. Three-dimensional genome rewiring in loci with human accelerated regions. Science. 2023 04 28; 380(6643):eabm1696. Keough KC, Whalen S, Inoue F, Przytycki PF, Fair T, Deng C, Steyert M, Ryu H, Lindblad-Toh K, Karlsson E, Zoonomia Consortium§, Nowakowski T, Ahituv N, Pollen A, Pollard KS. PMID: 37104607; PMCID: PMC10999243.
      View in: PubMed   Mentions: 45     Fields:    Translation:HumansAnimalsCells
    43. 385 A Cell Resolution Atlas of the Human Cerebrovasculature Reveals Angiogenic and Inflammatory Cell Programs in Arteriovenous Malformations. Neurosurgery. 2023 Apr 1; 69(Supplement_1):69-69. Winkler WE, Kim KC, Ross RJ, Garcia GJ, Gil GE, Oh OI, Chen CL, Wu WD, Catapano CJ, Raygor RK, Narsinh NK, Kim KH, Weinsheimer WS, Cooke CD, Walcott WB, Lawton LM, Gupta GN, Zlokovic ZB, Chang CE, Abla AA, Lim LD, Nowakowski NT. .
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    44. Transcriptomic cell type structures in vivo neuronal activity across multiple timescales. Cell Rep. 2023 04 25; 42(4):112318. Schneider A, Azabou M, McDougall-Vigier L, Parks DF, Ensley S, Bhaskaran-Nair K, Nowakowski T, Dyer EL, Hengen KB. PMID: 36995938; PMCID: PMC10539488.
      View in: PubMed   Mentions: 16     Fields:    Translation:AnimalsCells
    45. Type I interferon responsive microglia shape cortical development and behavior. bioRxiv. 2023 Mar 20. Escoubas CC, Dorman LC, Nguyen PT, Lagares-Linares C, Nakajo H, Anderson SR, Cuevas B, Vainchtein ID, Silva NJ, Xiao Y, Lidsky PV, Wang EY, Taloma SE, Nakao-Inoue H, Schwer B, Andino R, Nowakowski TJ, Molofsky AV. PMID: 35233577; PMCID: PMC8887080.
      View in: PubMed   Mentions:
    46. Massively parallel characterization of psychiatric disorder-associated and cell-type-specific regulatory elements in the developing human cortex. bioRxiv. 2023 Feb 16. Deng C, Whalen S, Steyert M, Ziffra R, Przytycki PF, Inoue F, Pereira DA, Capauto D, Norton S, Vaccarino FM, Pollen A, Nowakowski TJ, Ahituv N, Pollard KS. PMID: 36824845; PMCID: PMC9949039.
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    47. Abstract 52: Prevalence Of Somatic Activating Kras Mutations In Pediatric And Adult Sporadic Brain Arteriovenous Malformations. Stroke. 2023 Feb 1; 54(Suppl_1):a52-a52. Winkler WE, Garcia GJ, Tsang TC, Nelson NJ, McCulloch MC, Weinsheimer WS, Fox FC, Fullerton FH, Ko KN, Su SH, Nowakowski NT, Cooke CD, Hetts HS, Guney GE, PEKMEZCI PM, Tihan TT, Lawton LM, Abla AA, Gupta GN, Kim KH. .
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    48. New York Stem Cell Foundation Robertson Investigators. Cell Stem Cell. 2022 12 01; 29(12):1621-1623. McKinley KL, van Boxtel R, Finley LWS, Peña CJ, Nowakowski TJ. PMID: 36459965.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    49. In preprints: new insights into truncated radial glia. Development. 2022 11 15; 149(22). Steyert M, Nowakowski TJ. PMID: 36382646.
      View in: PubMed   Mentions:    Fields:    Translation:Cells
    50. Integrated gene analyses of de novo variants from 46,612 trios with autism and developmental disorders. Proc Natl Acad Sci U S A. 2022 Nov 15; 119(46):e2203491119. Wang T, Kim CN, Bakken TE, Gillentine MA, Henning B, Mao Y, Gilissen C, SPARK Consortium, Nowakowski TJ, Eichler EE. PMID: 36350923; PMCID: PMC9674258.
      View in: PubMed   Mentions: 35     Fields:    Translation:Humans
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    104. Evolution of New miRNAs and Cerebro-Cortical Development. Annu Rev Neurosci. 2018 07 08; 41:119-137. Kosik KS, Nowakowski T. PMID: 29618285.
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    105. Spatiotemporal gene expression trajectories reveal developmental hierarchies of the human cortex. Science. 2017 12 08; 358(6368):1318-1323. Nowakowski TJ, Bhaduri A, Pollen AA, Alvarado B, Mostajo-Radji MA, Di Lullo E, Haeussler M, Sandoval-Espinosa C, Liu SJ, Velmeshev D, Ounadjela JR, Shuga J, Wang X, Lim DA, West JA, Leyrat AA, Kent WJ, Kriegstein AR. PMID: 29217575; PMCID: PMC5991609.
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    106. The impact of microRNAs on transcriptional heterogeneity and gene co-expression across single embryonic stem cells. Nat Commun. 2017 01 19; 8:14126. Gambardella G, Carissimo A, Chen A, Cutillo L, Nowakowski TJ, di Bernardo D, Blelloch R. PMID: 28102192; PMCID: PMC5253645.
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    107. Human iPSC-Derived Cerebral Organoids Model Cellular Features of Lissencephaly and Reveal Prolonged Mitosis of Outer Radial Glia. Cell Stem Cell. 2017 04 06; 20(4):435-449.e4. Bershteyn M, Nowakowski TJ, Pollen AA, Di Lullo E, Nene A, Wynshaw-Boris A, Kriegstein AR. PMID: 28111201; PMCID: PMC5667944.
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    108. Zika virus cell tropism in the developing human brain and inhibition by azithromycin. Proc Natl Acad Sci U S A. 2016 12 13; 113(50):14408-14413. Retallack H, Di Lullo E, Arias C, Knopp KA, Laurie MT, Sandoval-Espinosa C, Mancia Leon WR, Krencik R, Ullian EM, Spatazza J, Pollen AA, Mandel-Brehm C, Nowakowski TJ, Kriegstein AR, DeRisi JL. PMID: 27911847; PMCID: PMC5167169.
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    109. Single-cell sequencing maps gene expression to mutational phylogenies in PDGF- and EGF-driven gliomas. Mol Syst Biol. 2016 Nov 25; 12(11):889. Müller S, Liu SJ, Di Lullo E, Malatesta M, Pollen AA, Nowakowski TJ, Kohanbash G, Aghi M, Kriegstein AR, Lim DA, Diaz A. PMID: 27888226; PMCID: PMC5147052.
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    110. Transformation of the Radial Glia Scaffold Demarcates Two Stages of Human Cerebral Cortex Development. Neuron. 2016 Sep 21; 91(6):1219-1227. Nowakowski TJ, Pollen AA, Sandoval-Espinosa C, Kriegstein AR. PMID: 27657449; PMCID: PMC5087333.
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    111. A Primate lncRNA Mediates Notch Signaling during Neuronal Development by Sequestering miRNA. Neuron. 2016 06 15; 90(6):1174-1188. Rani N, Nowakowski TJ, Zhou H, Godshalk SE, Lisi V, Kriegstein AR, Kosik KS. PMID: 27263970; PMCID: PMC4911262.
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    112. SCell: integrated analysis of single-cell RNA-seq data. Bioinformatics. 2016 07 15; 32(14):2219-20. Diaz A, Liu SJ, Sandoval C, Pollen A, Nowakowski TJ, Lim DA, Kriegstein A. PMID: 27153637; PMCID: PMC4937196.
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    113. Single-cell analysis of long non-coding RNAs in the developing human neocortex. Genome Biol. 2016 Apr 14; 17:67. Liu SJ, Nowakowski TJ, Pollen AA, Lui JH, Horlbeck MA, Attenello FJ, He D, Weissman JS, Kriegstein AR, Diaz AA, Lim DA. PMID: 27081004; PMCID: PMC4831157.
      View in: PubMed   Mentions: 191     Fields:    Translation:HumansCells
    114. Expression Analysis Highlights AXL as a Candidate Zika Virus Entry Receptor in Neural Stem Cells. Cell Stem Cell. 2016 05 05; 18(5):591-6. Nowakowski TJ, Pollen AA, Di Lullo E, Sandoval-Espinosa C, Bershteyn M, Kriegstein AR. PMID: 27038591; PMCID: PMC4860115.
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    115. Molecular identity of human outer radial glia during cortical development. Cell. 2015 Sep 24; 163(1):55-67. Pollen AA, Nowakowski TJ, Chen J, Retallack H, Sandoval-Espinosa C, Nicholas CR, Shuga J, Liu SJ, Oldham MC, Diaz A, Lim DA, Leyrat AA, West JA, Kriegstein AR. PMID: 26406371; PMCID: PMC4583716.
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    116. The long noncoding RNA Pnky regulates neuronal differentiation of embryonic and postnatal neural stem cells. Cell Stem Cell. 2015 Apr 02; 16(4):439-447. Ramos AD, Andersen RE, Liu SJ, Nowakowski TJ, Hong SJ, Gertz C, Salinas RD, Zarabi H, Kriegstein AR, Lim DA. PMID: 25800779; PMCID: PMC4388801.
      View in: PubMed   Mentions: 202     Fields:    Translation:HumansAnimalsCells
    117. Radial glia require PDGFD-PDGFRβ signalling in human but not mouse neocortex. Nature. 2014 Nov 13; 515(7526):264-8. Lui JH, Nowakowski TJ, Pollen AA, Javaherian A, Kriegstein AR, Oldham MC. PMID: 25391964; PMCID: PMC4231536.
      View in: PubMed   Mentions: 95     Fields:    Translation:HumansAnimalsCells
    118. Low-coverage single-cell mRNA sequencing reveals cellular heterogeneity and activated signaling pathways in developing cerebral cortex. Nat Biotechnol. 2014 Oct; 32(10):1053-8. Pollen AA, Nowakowski TJ, Shuga J, Wang X, Leyrat AA, Lui JH, Li N, Szpankowski L, Fowler B, Chen P, Ramalingam N, Sun G, Thu M, Norris M, Lebofsky R, Toppani D, Kemp DW, Wong M, Clerkson B, Jones BN, Wu S, Knutsson L, Alvarado B, Wang J, Weaver LS, May AP, Jones RC, Unger MA, Kriegstein AR, West JA. PMID: 25086649; PMCID: PMC4191988.
      View in: PubMed   Mentions: 449     Fields:    Translation:HumansAnimalsCells
    119. Loss of functional Dicer in mouse radial glia cell-autonomously prolongs cortical neurogenesis. Dev Biol. 2013 Oct 15; 382(2):530-7. Nowakowski TJ, Mysiak KS, O'Leary T, Fotaki V, Pratt T, Price DJ. PMID: 24012747; PMCID: PMC3793872.
      View in: PubMed   Mentions: 12     Fields:    Translation:AnimalsCells
    120. MicroRNA-92b regulates the development of intermediate cortical progenitors in embryonic mouse brain. Proc Natl Acad Sci U S A. 2013 Apr 23; 110(17):7056-61. Nowakowski TJ, Fotaki V, Pollock A, Sun T, Pratt T, Price DJ. PMID: 23569256; PMCID: PMC3637761.
      View in: PubMed   Mentions: 60     Fields:    Translation:AnimalsCells
    121. The expression and activity of β-catenin in the thalamus and its projections to the cerebral cortex in the mouse embryo. BMC Neurosci. 2012 Feb 23; 13:20. Pratt T, Davey JW, Nowakowski TJ, Raasumaa C, Rawlik K, McBride D, Clinton M, Mason JO, Price DJ. PMID: 22360971; PMCID: PMC3347985.
      View in: PubMed   Mentions: 8     Fields:    Translation:AnimalsCells
    122. Functional dicer is necessary for appropriate specification of radial glia during early development of mouse telencephalon. PLoS One. 2011; 6(8):e23013. Nowakowski TJ, Mysiak KS, Pratt T, Price DJ. PMID: 21826226; PMCID: PMC3149632.
      View in: PubMed   Mentions: 31     Fields:    Translation:AnimalsCells
    123. Novel lines of Pax6-/- embryonic stem cells exhibit reduced neurogenic capacity without loss of viability. BMC Neurosci. 2010 Feb 24; 11:26. Quinn JC, Molinek M, Nowakowski TJ, Mason JO, Price DJ. PMID: 20178645; PMCID: PMC2837049.
      View in: PubMed   Mentions: 7     Fields:    Translation:AnimalsCells
    124. Time-Multiplexed Laguerre-Gaussian holographic optical tweezers for biological applications. Opt Express. 2006 Apr 03; 14(7):3065-72. Lafong A, Hossack WJ, Arlt J, Nowakowski TJ, Read ND. PMID: 19516447.
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