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    Aaron Diaz, PhD

    TitleAssistant Professor
    SchoolUCSF School of Medicine
    DepartmentEpidemiology & Biostatistics
    Address35 Medical Center way
    San Fancisco CA 94143

       Overview 
       Overview
      I develop bioinformatic tools to study the genetics and epigenetics of pluripotency. I create statistics and software to synthesize the rapidly growing wealth of genome annotations publicly available with data generated by biologist collaborators in order to extract biologically relevant information. My research involves methods for genome wide screening, high throughput sequencing data analysis, and computational epigenomics with the common theme of understanding the mechanisms of pluripotency.


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      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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      1. Ramos AD, Diaz A, Nellore A, Delgado RN, Park KY, Gonzales-Roybal G, Oldham MC, Song JS, Lim DA. Integration of genome-wide approaches identifies lncRNAs of adult neural stem cells and their progeny in vivo. Cell Stem Cell. 2013 May 2; 12(5):616-28.
        View in: PubMed
      2. Nellore A, Bobkov K, Howe E, Pankov A, Diaz A, Song JS. NSeq: a multithreaded Java application for finding positioned nucleosomes from sequencing data. Front Genet. 2012; 3:320.
        View in: PubMed
      3. Diaz A, Nellore A, Song J S. Genome Biology. CHANCE: comprehensive software for quality control and validation of ChIP-seq data. 2012; 13(10).
      4. Diaz A, Park K, Lim DA, Song JS. Normalization, bias correction, and peak calling for ChIP-seq. Stat Appl Genet Mol Biol. 2012; 11(3):Article 9.
        View in: PubMed
      5. Hunkapiller J, Shen Y, Diaz A, Cagney G, McCleary D, Ramalho-Santos M, Krogan N, Ren B, Song JS, Reiter JF. Polycomb-like 3 promotes polycomb repressive complex 2 binding to CpG islands and embryonic stem cell self-renewal. PLoS Genet. 2012; 8(3):e1002576.
        View in: PubMed
      6. Diaz A. Proceedings of the 4th WSEAS/IASME International Conference on Dynamical Systems and Control. Rezoning Techniques for ALE Computations. 2008.
      7. Diaz, A. Nonlinear Analysis: Hybrid Systems. An Error Analysis for Execution Traces of Hybrid Automata Using Jacobi's Equation. 2008; 2(1).
      8. Maire P-H, De Buhan M, Diaz A, Dobrzynski C, Kluth G, Lagoutiere, F. European Series in Applied and Industrial Mathematics: Proceedings Societe de Mathematiques Appliquees et Industrielles. A Cell-Centered Arbitrary Lagrangian Eulerian (ALE) Method for Multimaterial Compressible Flows. 2008; 13.
      9. Diaz A. International Journal of Hybrid Systems. Extraction of Finite State Controllers, AD and DA maps, and Associated Small Topologies for Measure Valued Control Laws. 2003.
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