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    Mark Segal, PhD

    TitleProfessor
    SchoolUCSF School of Medicine
    DepartmentEpidemiology & Biostatistics
    Address550 16th. Street
    San Francisco CA 94158
    Phone415-514-8034
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      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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      1. Barrette AM, Roberts JK, Chapin C, Egan EA, Segal MR, Oses-Prieto JA, Chand S, Burlingame AL, Ballard PL. Antiinflammatory Effects of Budesonide in Human Fetal Lung. Am J Respir Cell Mol Biol. 2016 Nov; 55(5):623-632. PMID: 27281349.
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      2. Shenoy MK, Iwai S, Lin DL, Worodria W, Ayakaka I, Byanyima P, Kaswabuli S, Fong S, Stone S, Chang E, Davis JL, Faruqi AA, Segal MR, Huang L, Lynch SV. Immune Response and Mortality Risk Relate to Distinct Lung Microbiomes in HIV-Pneumonia Patients. Am J Respir Crit Care Med. 2016 Jul 22. PMID: 27447987.
        View in: PubMed
      3. Capurso D, Bengtsson H, Segal MR. Discovering hotspots in functional genomic data superposed on 3D chromatin configuration reconstructions. Nucleic Acids Res. 2016 Mar 18; 44(5):2028-35. PMID: 26869583.
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      4. Lee CS, Wang RW, Chang HH, Capurso D, Segal MR, Haber JE. Chromosome position determines the success of double-strand break repair. Proc Natl Acad Sci U S A. 2016 Jan 12; 113(2):E146-54. PMID: 26715752.
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      5. Segal MR, Bengtsson HL. Reconstruction of 3D genome architecture via a two-stage algorithm. BMC Bioinformatics. 2015; 16:373. PMID: 26553003; PMCID: PMC4638111.
      6. Karski EE, McIlvaine E, Segal MR, Krailo M, Grier HE, Granowetter L, Womer RB, Meyers PA, Felgenhauer J, Marina N, DuBois SG. Identification of Discrete Prognostic Groups in Ewing Sarcoma. Pediatr Blood Cancer. 2016 Jan; 63(1):47-53. PMID: 26257296.
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      7. Jayakumar A, Vittinghoff E, Segal MR, MacKenzie WR, Johnson JL, Gitta P, Saukkonen J, Anderson J, Weiner M, Engle M, Yoon C, Kato-Maeda M, Nahid P. Serum biomarkers of treatment response within a randomized clinical trial for pulmonary tuberculosis. Tuberculosis (Edinb). 2015 Jul; 95(4):415-20. PMID: 26022314; PMCID: PMC4521594 [Available on 07/01/16].
      8. Capurso D, Segal MR. Distance-based assessment of the localization of functional annotations in 3D genome reconstructions. BMC Genomics. 2014; 15:992. PMID: 25407917; PMCID: PMC4254257.
      9. Nielson JL, Guandique CF, Liu AW, Burke DA, Lash AT, Moseanko R, Hawbecker S, Strand SC, Zdunowski S, Irvine KA, Brock JH, Nout-Lomas YS, Gensel JC, Anderson KD, Segal MR, Rosenzweig ES, Magnuson DS, Whittemore SR, McTigue DM, Popovich PG, Rabchevsky AG, Scheff SW, Steward O, Courtine G, Edgerton VR, Tuszynski MH, Beattie MS, Bresnahan JC, Ferguson AR. Development of a database for translational spinal cord injury research. J Neurotrauma. 2014 Nov 1; 31(21):1789-99. PMID: 25077610; PMCID: PMC4186058.
      10. Bendjilali N, Nelson J, Weinsheimer S, Sidney S, Zaroff JG, Hetts SW, Segal M, Pawlikowska L, McCulloch CE, Young WL, Kim H. Common variants on 9p21.3 are associated with brain arteriovenous malformations with accompanying arterial aneurysms. J Neurol Neurosurg Psychiatry. 2014 Nov; 85(11):1280-3. PMID: 24777168; PMCID: PMC4201968.
      11. Iwai S, Huang D, Fong S, Jarlsberg LG, Worodria W, Yoo S, Cattamanchi A, Davis JL, Kaswabuli S, Segal M, Huang L, Lynch SV. The lung microbiome of Ugandan HIV-infected pneumonia patients is compositionally and functionally distinct from that of San Franciscan patients. PLoS One. 2014; 9(4):e95726. PMID: 24752365; PMCID: PMC3994144.
      12. Segal MR, Xiong H, Capurso D, Vazquez M, Arsuaga J. Reproducibility of 3D chromatin configuration reconstructions. Biostatistics. 2014 Jul; 15(3):442-56. PMID: 24519450; PMCID: PMC4059464.
      13. Hartigan-O'Connor DJ, Lin D, Ryan JC, Shvachko VA, Cozen ML, Segal MR, Terrault NA, Lanier LL, Manos MM, McCune JM. Monocyte activation by interferon a is associated with failure to achieve a sustained virologic response after treatment for hepatitis C virus infection. J Infect Dis. 2014 May 15; 209(10):1602-12. PMID: 24325966; PMCID: PMC3997582.
      14. Liu J, Segal MR, Kelly MJ, Pelton JG, Kim M, James TL, Litt L. 13C NMR metabolomic evaluation of immediate and delayed mild hypothermia in cerebrocortical slices after oxygen-glucose deprivation. Anesthesiology. 2013 Nov; 119(5):1120-36. PMID: 23748856; PMCID: PMC3890426.
      15. Burrill CP, Westesson O, Schulte MB, Strings VR, Segal M, Andino R. Global RNA structure analysis of poliovirus identifies a conserved RNA structure involved in viral replication and infectivity. J Virol. 2013 Nov; 87(21):11670-83. PMID: 23966409; PMCID: PMC3807356.
      16. Kratz JR, Tham PT, Mulvihill MS, Ziaei F, Ray MR, Hurst JW, Segal MR, Berryman DM, Chu W, He B, Jablons DM, Mann MJ. Analytical validation of a practical molecular assay prognostic of survival in nonsquamous non-small cell lung cancer. Diagn Mol Pathol. 2013 Jun; 22(2):65-9. PMID: 23628816.
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      17. Liu J, Sheldon RA, Segal MR, Kelly MJ, Pelton JG, Ferriero DM, James TL, Litt L. 1H nuclear magnetic resonance brain metabolomics in neonatal mice after hypoxia-ischemia distinguished normothermic recovery from mild hypothermia recoveries. Pediatr Res. 2013 Aug; 74(2):170-9. PMID: 23708689; PMCID: PMC3734529.
      18. Ferguson AR, Irvine KA, Gensel JC, Nielson JL, Lin A, Ly J, Segal MR, Ratan RR, Bresnahan JC, Beattie MS. Derivation of multivariate syndromic outcome metrics for consistent testing across multiple models of cervical spinal cord injury in rats. PLoS One. 2013; 8(3):e59712. PMID: 23544088; PMCID: PMC3609747.
      19. Capurso D, Xiong H, Segal MR. A histone arginine methylation localizes to nucleosomes in satellite II and III DNA sequences in the human genome. BMC Genomics. 2012; 13:630. PMID: 23153121; PMCID: PMC3559892.
      20. Dubois SG, Geier E, Batra V, Yee SW, Neuhaus J, Segal M, Martinez D, Pawel B, Yanik G, Naranjo A, London WB, Kreissman S, Baker D, Attiyeh E, Hogarty MD, Maris JM, Giacomini K, Matthay KK. Evaluation of Norepinephrine Transporter Expression and Metaiodobenzylguanidine Avidity in Neuroblastoma: A Report from the Children's Oncology Group. Int J Mol Imaging. 2012; 2012:250834. PMID: 23050139; PMCID: PMC3463166.
      21. Bacchetti P, McCulloch C, Segal MR. Being 'underpowered' does not make a study unethical. Stat Med. 2012 Dec 20; 31(29):4138-9; author reply 4140-1. PMID: 22763861.
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      22. Kratz JR, He J, Van Den Eeden SK, Zhu ZH, Gao W, Pham PT, Mulvihill MS, Ziaei F, Zhang H, Su B, Zhi X, Quesenberry CP, Habel LA, Deng Q, Wang Z, Zhou J, Li H, Huang MC, Yeh CC, Segal MR, Ray MR, Jones KD, Raz DJ, Xu Z, Jahan TM, Berryman D, He B, Mann MJ, Jablons DM. A practical molecular assay to predict survival in resected non-squamous, non-small-cell lung cancer: development and international validation studies. Lancet. 2012 Mar 3; 379(9818):823-32. PMID: 22285053; PMCID: PMC3294002.
      23. Segal MR, Xiong H, Bengtsson H, Bourgon R, Gentleman R. Querying genomic databases: refining the connectivity map. Stat Appl Genet Mol Biol. 2012; 11(2). PMID: 22499690.
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      24. Xiong H, Capurso D, Sen S, Segal MR. Sequence-based classification using discriminatory motif feature selection. PLoS One. 2011; 6(11):e27382. PMID: 22102890; PMCID: PMC3213122.
      25. Miller J, Arrasate M, Brooks E, Libeu CP, Legleiter J, Hatters D, Curtis J, Cheung K, Krishnan P, Mitra S, Widjaja K, Shaby BA, Lotz GP, Newhouse Y, Mitchell EJ, Osmand A, Gray M, Thulasiramin V, Saudou F, Segal M, Yang XW, Masliah E, Thompson LM, Muchowski PJ, Weisgraber KH, Finkbeiner S. Identifying polyglutamine protein species in situ that best predict neurodegeneration. Nat Chem Biol. 2011 Dec; 7(12):925-34. PMID: 22037470; PMCID: PMC3271120.
      26. Liu J, Litt L, Segal MR, Kelly MJ, Pelton JG, Kim M. Metabolomics of oxidative stress in recent studies of endogenous and exogenously administered intermediate metabolites. Int J Mol Sci. 2011; 12(10):6469-501. PMID: 22072900; PMCID: PMC3210991.
      27. DuBois SG, Goldsby R, Segal M, Woo J, Copren K, Kane JP, Pullinger CR, Matthay KK, Witte J, Lessnick SL, Robison LL, Bhatia S, Strong LC. Evaluation of polymorphisms in EWSR1 and risk of Ewing sarcoma: a report from the Childhood Cancer Survivor Study. Pediatr Blood Cancer. 2012 Jul 15; 59(1):52-6. PMID: 21793187; PMCID: PMC3204324.
      28. Okamoto J, Kratz JR, Hirata T, Mikami I, Raz D, Segal M, Chen Z, Zhou HM, Pham P, Li H, Yagui-Beltran A, Beltran A, Ray MR, Koizumi K, Shimizu K, Jablons D, He B. Downregulation of EMX2 is associated with clinical outcomes in lung adenocarcinoma patients. Clin Lung Cancer. 2011 Jul; 12(4):237-44. PMID: 21726823; PMCID: PMC3285542.
      29. Rehkopf DH, Laraia BA, Segal M, Braithwaite D, Epel E. The relative importance of predictors of body mass index change, overweight and obesity in adolescent girls. Int J Pediatr Obes. 2011 Jun; 6(2-2):e233-42. PMID: 21244233.
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      30. Day LW, Espey DK, Madden E, Segal M, Terdiman JP. Screening prevalence and incidence of colorectal cancer among American Indian/Alaskan natives in the Indian Health Service. Dig Dis Sci. 2011 Jul; 56(7):2104-13. PMID: 21234688; PMCID: PMC3112488.
      31. Segal MR, Xiao Y, Huffer FW. Clustering with exclusion zones: genomic applications. Biostatistics. 2011 Apr; 12(2):234-46. PMID: 21051753.
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      32. Kelly L, Fukushima H, Karchin R, Gow JM, Chinn LW, Pieper U, Segal MR, Kroetz DL, Sali A. Functional hot spots in human ATP-binding cassette transporter nucleotide binding domains. Protein Sci. 2010 Nov; 19(11):2110-21. PMID: 20799350; PMCID: PMC3005782.
      33. Liu J, Litt L, Segal MR, Kelly MJ, Yoshihara HA, James TL. Outcome-related metabolomic patterns from 1H/31P NMR after mild hypothermia treatments of oxygen-glucose deprivation in a neonatal brain slice model of asphyxia. J Cereb Blood Flow Metab. 2011 Feb; 31(2):547-59. PMID: 20717124; PMCID: PMC3010526.
      34. Ballard PL, Lee JW, Fang X, Chapin C, Allen L, Segal MR, Fischer H, Illek B, Gonzales LW, Kolla V, Matthay MA. Regulated gene expression in cultured type II cells of adult human lung. Am J Physiol Lung Cell Mol Physiol. 2010 Jul; 299(1):L36-50. PMID: 20382749; PMCID: PMC2904098.
      35. Day LW, Cello JP, Madden E, Segal M. Prospective assessment of inpatient gastrointestinal consultation requests in an academic teaching hospital. Am J Gastroenterol. 2010 Mar; 105(3):484-9. PMID: 20203634.
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      36. Cox MJ, Huang YJ, Fujimura KE, Liu JT, McKean M, Boushey HA, Segal MR, Brodie EL, Cabana MD, Lynch SV. Lactobacillus casei abundance is associated with profound shifts in the infant gut microbiome. PLoS One. 2010; 5(1):e8745. PMID: 20090909; PMCID: PMC2807455.
      37. Barajas RF, Chang JS, Segal MR, Parsa AT, McDermott MW, Berger MS, Cha S. Differentiation of recurrent glioblastoma multiforme from radiation necrosis after external beam radiation therapy with dynamic susceptibility-weighted contrast-enhanced perfusion MR imaging. Radiology. 2009 Nov; 253(2):486-96. PMID: 19789240; PMCID: PMC2770116.
      38. Xiao Y, Segal MR. Identification of yeast transcriptional regulation networks using multivariate random forests. PLoS Comput Biol. 2009 Jun; 5(6):e1000414. PMID: 19543377; PMCID: PMC2691601.
      39. Donovan MJ, Khan FM, Fernandez G, Mesa-Tejada R, Sapir M, Zubek VB, Powell D, Fogarasi S, Vengrenyuk Y, Teverovskiy M, Segal MR, Karnes RJ, Gaffey TA, Busch C, Haggman M, Hlavcak P, Freedland SJ, Vollmer RT, Albertsen P, Costa J, Cordon-Cardo C. Personalized prediction of tumor response and cancer progression on prostate needle biopsy. J Urol. 2009 Jul; 182(1):125-32. PMID: 19450827.
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      40. Segal MR. A novel topology for representing protein folds. Protein Sci. 2009 Apr; 18(4):686-93. PMID: 19309686; PMCID: PMC2762581.
      41. Barajas RF, Chang JS, Sneed PK, Segal MR, McDermott MW, Cha S. Distinguishing recurrent intra-axial metastatic tumor from radiation necrosis following gamma knife radiosurgery using dynamic susceptibility-weighted contrast-enhanced perfusion MR imaging. AJNR Am J Neuroradiol. 2009 Feb; 30(2):367-72. PMID: 19022867.
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      42. Liu J, Segal M, Yoo S, Yang GY, Kelly M, James TL, Litt L. Antioxidant effect of ethyl pyruvate in respiring neonatal cerebrocortical slices after H(2)O(2) stress. Neurochem Int. 2009 Feb; 54(2):106-10. PMID: 19041675.
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      43. Raz DJ, Ray MR, Kim JY, He B, Taron M, Skrzypski M, Segal M, Gandara DR, Rosell R, Jablons DM. A multigene assay is prognostic of survival in patients with early-stage lung adenocarcinoma. Clin Cancer Res. 2008 Sep 1; 14(17):5565-70. PMID: 18765549.
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      44. Segal MR. On E-values for tandem MS scoring schemes. Bioinformatics. 2008 Jul 15; 24(14):1652-3; author reply 1654. PMID: 18562272.
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      45. Bacchetti P, McCulloch CE, Segal MR. Simple, defensible sample sizes based on cost efficiency. Biometrics. 2008 Jun; 64(2):577-85; discussion 586-94. PMID: 18482055; PMCID: PMC2769573.
      46. Segal MR. Re-cracking the nucleosome positioning code. Stat Appl Genet Mol Biol. 2008; 7(1):Article14. PMID: 18454729.
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      47. Xiao Y, Segal MR. Biological sequence classification utilizing positive and unlabeled data. Bioinformatics. 2008 May 1; 24(9):1198-205. PMID: 18344247.
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      48. Lee SJ, Moody-Ayers SY, Landefeld CS, Walter LC, Lindquist K, Segal MR, Covinsky KE. The relationship between self-rated health and mortality in older black and white Americans. J Am Geriatr Soc. 2007 Oct; 55(10):1624-9. PMID: 17697102.
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      49. Xiao Y, Segal MR, Yang YH, Yeh RF. A multi-array multi-SNP genotyping algorithm for Affymetrix SNP microarrays. Bioinformatics. 2007 Jun 15; 23(12):1459-67. PMID: 17459966.
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      50. Segal MR. Validation in genomics: CpG island methylation revisited. Stat Appl Genet Mol Biol. 2006; 5:Article29. PMID: 17402913.
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      51. Barbour JD, Hecht FM, Little SJ, Markowitz M, Daar ES, Kelleher AD, Routy JP, Campbell TB, Rosenberg ES, Segal MR, Weidler J, Grant RM. Greater CD4 T-cell gains after one year of antiretroviral therapy are associated with lower HIV-1 pol replication capacity. AIDS. 2006 Oct 24; 20(16):2123-5. PMID: 17053362.
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      52. Triponez F, Wong M, Sturgeon C, Caron N, Ginzinger DG, Segal MR, Kebebew E, Duh QY, Clark OH. Does familial non-medullary thyroid cancer adversely affect survival? World J Surg. 2006 May; 30(5):787-93. PMID: 16479341.
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      53. Lee SJ, Lindquist K, Segal MR, Covinsky KE. Development and validation of a prognostic index for 4-year mortality in older adults. JAMA. 2006 Feb 15; 295(7):801-8. PMID: 16478903.
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      54. Segal MR. Microarray gene expression data with linked survival phenotypes: diffuse large-B-cell lymphoma revisited. Biostatistics. 2006 Apr; 7(2):268-85. PMID: 16284340.
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      55. Xiao Y, Yang YH, Burckin TA, Shiue L, Hartzog GA, Segal MR. Analysis of a splice array experiment elucidates roles of chromatin elongation factor Spt4-5 in splicing. PLoS Comput Biol. 2005 Sep; 1(4):e39. PMID: 16172632; PMCID: PMC1214541.
      56. Xiao Y, Segal MR. Prediction of genomewide conserved epitope profiles of HIV-1: classifier choice and peptide representation. Stat Appl Genet Mol Biol. 2005; 4:Article25. PMID: 16646843.
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      57. Mistry AR, Felix CA, Whitmarsh RJ, Mason A, Reiter A, Cassinat B, Parry A, Walz C, Wiemels JL, Segal MR, Adès L, Blair IA, Osheroff N, Peniket AJ, Lafage-Pochitaloff M, Cross NC, Chomienne C, Solomon E, Fenaux P, Grimwade D. DNA topoisomerase II in therapy-related acute promyelocytic leukemia. N Engl J Med. 2005 Apr 14; 352(15):1529-38. PMID: 15829534.
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      58. Xiao Y, Segal MR, Yang YH. Stepwise normalization of two-channel spotted microarrays. Stat Appl Genet Mol Biol. 2005; 4:Article4. PMID: 16646857.
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      59. Bacchetti P, Wolf LE, Segal MR, McCulloch CE. Ethics and sample size. Am J Epidemiol. 2005 Jan 15; 161(2):105-10. PMID: 15632258.
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      60. Yang YH, Xiao Y, Segal MR. Identifying differentially expressed genes from microarray experiments via statistic synthesis. Bioinformatics. 2005 Apr 1; 21(7):1084-93. PMID: 15513985.
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      61. Arrasate M, Mitra S, Schweitzer ES, Segal MR, Finkbeiner S. Inclusion body formation reduces levels of mutant huntingtin and the risk of neuronal death. Nature. 2004 Oct 14; 431(7010):805-10. PMID: 15483602.
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      62. Cummings MP, Segal MR. Few amino acid positions in rpoB are associated with most of the rifampin resistance in Mycobacterium tuberculosis. BMC Bioinformatics. 2004 Sep 28; 5:137. PMID: 15453919; PMCID: PMC524371.
      63. Bass EC, Ashford FA, Segal MR, Lotz JC. Biaxial testing of human annulus fibrosus and its implications for a constitutive formulation. Ann Biomed Eng. 2004 Sep; 32(9):1231-42. PMID: 15493511.
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      64. Barbour JD, Hecht FM, Wrin T, Liegler TJ, Ramstead CA, Busch MP, Segal MR, Petropoulos CJ, Grant RM. Persistence of primary drug resistance among recently HIV-1 infected adults. AIDS. 2004 Aug 20; 18(12):1683-9. PMID: 15280779.
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      65. Barbour JD, Hecht FM, Wrin T, Segal MR, Ramstead CA, Liegler TJ, Busch MP, Petropoulos CJ, Hellmann NS, Kahn JO, Grant RM. Higher CD4+ T cell counts associated with low viral pol replication capacity among treatment-naive adults in early HIV-1 infection. J Infect Dis. 2004 Jul 15; 190(2):251-6. PMID: 15216458.
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      66. Rabert D, Xiao Y, Yiangou Y, Kreder D, Sangameswaran L, Segal MR, Hunt CA, Birch R, Anand P. Plasticity of gene expression in injured human dorsal root ganglia revealed by GeneChip oligonucleotide microarrays. J Clin Neurosci. 2004 Apr; 11(3):289-99. PMID: 14975420.
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      67. Pantell RH, Newman TB, Bernzweig J, Bergman DA, Takayama JI, Segal M, Finch SA, Wasserman RC. Management and outcomes of care of fever in early infancy. JAMA. 2004 Mar 10; 291(10):1203-12. PMID: 15010441.
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      68. Segal MR, Barbour JD, Grant RM. Relating HIV-1 sequence variation to replication capacity via trees and forests. Stat Appl Genet Mol Biol. 2004; 3:Article2; discussion article 7, article 9. PMID: 16646798.
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      69. Xiao Y, Hunt CA, Segal MR, Yang YH. Novel stepwise normalization method for two-channel cDNA microarrays. Conf Proc IEEE Eng Med Biol Soc. 2004; 4:2921-4. PMID: 17270889.
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      70. Reiter A, Saussele S, Grimwade D, Wiemels JL, Segal MR, Lafage-Pochitaloff M, Walz C, Weisser A, Hochhaus A, Willer A, Reichert A, Büchner T, Lengfelder E, Hehlmann R, Cross NC. Genomic anatomy of the specific reciprocal translocation t(15;17) in acute promyelocytic leukemia. Genes Chromosomes Cancer. 2003 Feb; 36(2):175-88. PMID: 12508246.
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      71. Segal MR, Dahlquist KD, Conklin BR. Regression approaches for microarray data analysis. J Comput Biol. 2003; 10(6):961-80. PMID: 14980020.
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      72. O'Hare AM, Bacchetti P, Segal M, Hsu CY, Johansen KL. Factors associated with future amputation among patients undergoing hemodialysis: results from the Dialysis Morbidity and Mortality Study Waves 3 and 4. Am J Kidney Dis. 2003 Jan; 41(1):162-70. PMID: 12500233.
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      73. Mann JK, Tager IB, Lurmann F, Segal M, Quesenberry CP, Lugg MM, Shan J, Van Den Eeden SK. Air pollution and hospital admissions for ischemic heart disease in persons with congestive heart failure or arrhythmia. Environ Health Perspect. 2002 Dec; 110(12):1247-52. PMID: 12460805; PMCID: PMC1241113.
      74. Wiemels JL, Leonard BC, Wang Y, Segal MR, Hunger SP, Smith MT, Crouse V, Ma X, Buffler PA, Pine SR. Site-specific translocation and evidence of postnatal origin of the t(1;19) E2A-PBX1 fusion in childhood acute lymphoblastic leukemia. Proc Natl Acad Sci U S A. 2002 Nov 12; 99(23):15101-6. PMID: 12415113; PMCID: PMC137550.
      75. Barbour JD, Wrin T, Grant RM, Martin JN, Segal MR, Petropoulos CJ, Deeks SG. Evolution of phenotypic drug susceptibility and viral replication capacity during long-term virologic failure of protease inhibitor therapy in human immunodeficiency virus-infected adults. J Virol. 2002 Nov; 76(21):11104-12. PMID: 12368352; PMCID: PMC136622.
      76. Xiao Y, Segal MR, Rabert D, Ahn AH, Anand P, Sangameswaran L, Hu D, Hunt CA. Assessment of differential gene expression in human peripheral nerve injury. BMC Genomics. 2002 Sep 27; 3(1):28. PMID: 12354329; PMCID: PMC137578.
      77. Keles S, Segal MR. Residual-based tree-structured survival analysis. Stat Med. 2002 Jan 30; 21(2):313-26. PMID: 11782067.
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      78. Xiao Z, Greaves MF, Buffler P, Smith MT, Segal MR, Dicks BM, Wiencke JK, Wiemels JL. Molecular characterization of genomic AML1-ETO fusions in childhood leukemia. Leukemia. 2001 Dec; 15(12):1906-13. PMID: 11753612.
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      79. Woodruff PG, Khashayar R, Lazarus SC, Janson S, Avila P, Boushey HA, Segal M, Fahy JV. Relationship between airway inflammation, hyperresponsiveness, and obstruction in asthma. J Allergy Clin Immunol. 2001 Nov; 108(5):753-8. PMID: 11692100.
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      80. Chiu EJ, Newitt DC, Segal MR, Hu SS, Lotz JC, Majumdar S. Magnetic resonance imaging measurement of relaxation and water diffusion in the human lumbar intervertebral disc under compression in vitro. Spine (Phila Pa 1976). 2001 Oct 1; 26(19):E437-44. PMID: 11698903.
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      81. Alldredge BK, Gelb AM, Isaacs SM, Corry MD, Allen F, Ulrich S, Gottwald MD, O'Neil N, Neuhaus JM, Segal MR, Lowenstein DH. A comparison of lorazepam, diazepam, and placebo for the treatment of out-of-hospital status epilepticus. N Engl J Med. 2001 Aug 30; 345(9):631-7. PMID: 11547716.
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      82. Segal MR, Cummings MP, Hubbard AE. Relating amino acid sequence to phenotype: analysis of peptide-binding data. Biometrics. 2001 Jun; 57(2):632-42. PMID: 11414594.
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      83. Levkovitz Y, Grisaru N, Segal M. Transcranial magnetic stimulation and antidepressive drugs share similar cellular effects in rat hippocampus. Neuropsychopharmacology. 2001 Jun; 24(6):608-16. PMID: 11331140.
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      84. Collin C, Vicario-Abejon C, Rubio ME, Wenthold RJ, McKay RD, Segal M. Neurotrophins act at presynaptic terminals to activate synapses among cultured hippocampal neurons. Eur J Neurosci. 2001 Apr; 13(7):1273-82. PMID: 11298787.
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      85. Coskun A, Lequin M, Segal M, Vigneron DB, Ferriero DM, Barkovich AJ. Quantitative analysis of MR images in asphyxiated neonates: correlation with neurodevelopmental outcome. AJNR Am J Neuroradiol. 2001 Feb; 22(2):400-5. PMID: 11156790.
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      86. Santucci RA, McAninch JW, Safir M, Mario LA, Service S, Segal MR. Validation of the American Association for the Surgery of Trauma organ injury severity scale for the kidney. J Trauma. 2001 Feb; 50(2):195-200. PMID: 11242281.
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      87. Capizzano AA, Vermathen P, Laxer KD, Ende GR, Norman D, Rowley H, Matson GB, Maudsley AA, Segal MR, Weiner MW. Temporal lobe epilepsy: qualitative reading of 1H MR spectroscopic images for presurgical evaluation. Radiology. 2001 Jan; 218(1):144-51. PMID: 11152793; PMCID: PMC2744695.
      88. Thomas S, Cass L, Prince W, Segal M. Brain and CSF entry of the novel non-nucleoside reverse transcriptase inhibitor, GW420867X. Neuroreport. 2000 Nov 27; 11(17):3811-5. PMID: 11117496.
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      89. Aberg JA, Watson J, Segal M, Chang LW. Clinical utility of monitoring serum cryptococcal antigen (sCRAG) titers in patients with AIDS-related cryptococcal disease. HIV Clin Trials. 2000 Jul-Aug; 1(1):1-6. PMID: 11590483.
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      90. Avila PC, Segal MR, Wong HH, Boushey HA, Fahy JV. Predictors of late asthmatic response. Logistic regression and classification tree analyses. Am J Respir Crit Care Med. 2000 Jun; 161(6):2092-5. PMID: 10852792.
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      91. Capizzano AA, Schuff N, Amend DL, Tanabe JL, Norman D, Maudsley AA, Jagust W, Chui HC, Fein G, Segal MR, Weiner MW. Subcortical ischemic vascular dementia: assessment with quantitative MR imaging and 1H MR spectroscopy. AJNR Am J Neuroradiol. 2000 Apr; 21(4):621-30. PMID: 10782769; PMCID: PMC1945115.
      92. Levkovitz Y, Avignone E, Groner Y, Segal M. Upregulation of GABA neurotransmission suppresses hippocampal excitability and prevents long-term potentiation in transgenic superoxide dismutase-overexpressing mice. J Neurosci. 1999 Dec 15; 19(24):10977-84. PMID: 10594078.
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      93. Kinkel K, Kaji Y, Yu KK, Segal MR, Lu Y, Powell CB, Hricak H. Radiologic staging in patients with endometrial cancer: a meta-analysis. Radiology. 1999 Sep; 212(3):711-8. PMID: 10478237.
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      94. Kwok Y, Kim C, Grady D, Segal M, Redberg R. Meta-analysis of exercise testing to detect coronary artery disease in women. Am J Cardiol. 1999 Mar 1; 83(5):660-6. PMID: 10080415.
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      95. Smith-Bindman R, Kerlikowske K, Feldstein VA, Subak L, Scheidler J, Segal M, Brand R, Grady D. Endovaginal ultrasound to exclude endometrial cancer and other endometrial abnormalities. JAMA. 1998 Nov 4; 280(17):1510-7. PMID: 9809732.
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      96. Vicario-Abejón C, Collin C, McKay RD, Segal M. Neurotrophins induce formation of functional excitatory and inhibitory synapses between cultured hippocampal neurons. J Neurosci. 1998 Sep 15; 18(18):7256-71. PMID: 9736647.
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      97. Okabe S, Collin C, Auerbach JM, Meiri N, Bengzon J, Kennedy MB, Segal M, McKay RD. Hippocampal synaptic plasticity in mice overexpressing an embryonic subunit of the NMDA receptor. J Neurosci. 1998 Jun 1; 18(11):4177-88. PMID: 9592097.
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      98. Nevitt MC, Ettinger B, Black DM, Stone K, Jamal SA, Ensrud K, Segal M, Genant HK, Cummings SR. The association of radiographically detected vertebral fractures with back pain and function: a prospective study. Ann Intern Med. 1998 May 15; 128(10):793-800. PMID: 9599190.
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      99. Salamon H, Segal MR, Ponce de Leon A, Small PM. Accommodating error analysis in comparison and clustering of molecular fingerprints. Emerg Infect Dis. 1998 Apr-Jun; 4(2):159-68. PMID: 9621186; PMCID: PMC2640126.
      100. Tager IB, Künzli N, Lurmann F, Ngo L, Segal M, Balmes J. Methods development for epidemiologic investigations of the health effects of prolonged ozone exposure. Part II. An approach to retrospective estimation of lifetime ozone exposure using a questionnaire and ambient monitoring data (California sites). Res Rep Health Eff Inst. 1998 Mar; (81):27-78; discussion 109-21. PMID: 9643947.
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      101. Scheidler J, Hricak H, Yu KK, Subak L, Segal MR. Radiological evaluation of lymph node metastases in patients with cervical cancer. A meta-analysis. JAMA. 1997 Oct 1; 278(13):1096-101. PMID: 9315770.
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      102. Segal MR, Wight S, Hanrahan JP, Tager IB. Maternal smoking during pregnancy and birth outcomes with weight gain adjustments via varying-coefficient models. Stat Med. 1997 Jul 30; 16(14):1603-16. PMID: 9257415.
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      103. Colford JM, Segal M, Tabnak F, Chen M, Sun R, Tager I. Temporal trends and factors associated with survival after Pneumocystis carinii pneumonia in California, 1983-1992. Am J Epidemiol. 1997 Jul 15; 146(2):115-27. PMID: 9230773.
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      104. Segal MR. Features of tree-structured survival analysis. Epidemiology. 1997 Jul; 8(4):344-6. PMID: 9209845.
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      105. Collin C, Miyaguchi K, Segal M. Dendritic spine density and LTP induction in cultured hippocampal slices. J Neurophysiol. 1997 Mar; 77(3):1614-23. PMID: 9084624.
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      106. Segal MR, Neuhaus JM, James IR. Dependence estimation for marginal models of multivariate survival data. Lifetime Data Anal. 1997; 3(3):251-68. PMID: 9384655.
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      107. Künzli N, Lurmann F, Segal M, Ngo L, Balmes J, Tager IB. Association between lifetime ambient ozone exposure and pulmonary function in college freshmen--results of a pilot study. Environ Res. 1997 Jan; 72(1):8-23. PMID: 9012368.
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      108. Künzli N, Lurman F, Segal M, Ngo L, Balmes J, Tager IB. Reliability of lifetime residential history and activity measures as elements of cumulative ambient ozone exposure assessment. J Expo Anal Environ Epidemiol. 1996 Jul-Sep; 6(3):289-310. PMID: 8889950.
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      109. Selig DK, Segal MR, Liao D, Malenka RC, Malinow R, Nicoll RA, Lisman JE. Examination of the role of cGMP in long-term potentiation in the CA1 region of the hippocampus. Learn Mem. 1996 Jul-Aug; 3(1):42-8. PMID: 10456075.
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      110. Auerbach JM, Segal M. Muscarinic receptors mediating depression and long-term potentiation in rat hippocampus. J Physiol. 1996 Apr 15; 492 ( Pt 2):479-93. PMID: 9019544; PMCID: PMC1158842.
      111. Segal MR. Extending the elements of tree-structured regression. Stat Methods Med Res. 1995 Sep; 4(3):219-36. PMID: 8548104.
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      112. Weiss ST, Segal MR, Sparrow D, Wager C. Relation of FEV1 and peripheral blood leukocyte count to total mortality. The Normative Aging Study. Am J Epidemiol. 1995 Sep 1; 142(5):493-8; discussion 499-503. PMID: 7677128.
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      113. Bacchetti P, Segal MR. Survival trees with time-dependent covariates: application to estimating changes in the incubation period of AIDS. Lifetime Data Anal. 1995; 1(1):35-47. PMID: 9385090.
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      114. Auerbach JM, Segal M. A novel cholinergic induction of long-term potentiation in rat hippocampus. J Neurophysiol. 1994 Oct; 72(4):2034-40. PMID: 7823117.
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      115. Segal MR, Tager IB. Trees and tracking. Stat Med. 1993 Dec 15; 12(23):2153-68. PMID: 8310186.
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      116. Neuhaus JM, Segal MR. Design effects for binary regression models fitted to dependent data. Stat Med. 1993 Jul 15; 12(13):1259-68. PMID: 8210825.
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      117. Segal MR, Neuhaus JM. Robust inference for multivariate survival data. Stat Med. 1993 Jun 15; 12(11):1019-31. PMID: 8341863.
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      118. Marino RJ, Huang M, Knight P, Herbison GJ, Ditunno JF, Segal M. Assessing selfcare status in quadriplegia: comparison of the quadriplegia index of function (QIF) and the functional independence measure (FIM). Paraplegia. 1993 Apr; 31(4):225-33. PMID: 8493037.
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      119. Bacchetti P, Segal MR, Hessol NA, Jewell NP. Different AIDS incubation periods and their impacts on reconstructing human immunodeficiency virus epidemics and projecting AIDS incidence. Proc Natl Acad Sci U S A. 1993 Mar 15; 90(6):2194-6. PMID: 8460123; PMCID: PMC46052.
      120. O'Connor GT, Sparrow D, Segal M, Weiss ST. Risk factors for ventilatory impairment among middle-aged and elderly men. The Normative Aging Study. Chest. 1993 Feb; 103(2):376-82. PMID: 8432122.
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      121. Davis MA, Ettinger WH, Neuhaus JM, Barclay JD, Segal MR. Correlates of knee pain among US adults with and without radiographic knee osteoarthritis. J Rheumatol. 1992 Dec; 19(12):1943-9. PMID: 1294744.
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      122. Barr MB, Weiss ST, Segal MR, Tager IB, Speizer FE. The relationship of nasal disorders to lower respiratory tract symptoms and illness in a random sample of children. Pediatr Pulmonol. 1992 Oct; 14(2):91-4. PMID: 1437356.
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      123. Muñoz A, Carey V, Schouten JP, Segal M, Rosner B. A parametric family of correlation structures for the analysis of longitudinal data. Biometrics. 1992 Sep; 48(3):733-42. PMID: 1420837.
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      124. Richter-Levin G, Markram H, Segal M. Spontaneous recovery of deficits in spatial memory and cholinergic potentiation of NMDA in CA1 neurons during chronic lithium treatment. Hippocampus. 1992 Jul; 2(3):279-86. PMID: 1339194.
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      125. Lifson AR, Hessol NA, Buchbinder SP, O'Malley PM, Barnhart L, Segal M, Katz MH, Holmberg SD. Serum beta 2-microglobulin and prediction of progression to AIDS in HIV infection. Lancet. 1992 Jun 13; 339(8807):1436-40. PMID: 1351128.
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      126. Hanrahan JP, Tager IB, Segal MR, Tosteson TD, Castile RG, Van Vunakis H, Weiss ST, Speizer FE. The effect of maternal smoking during pregnancy on early infant lung function. Am Rev Respir Dis. 1992 May; 145(5):1129-35. PMID: 1586058.
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      127. Davis MA, Neuhaus JM, Moritz DJ, Segal MR. Living arrangements and survival among middle-aged and older adults in the NHANES I epidemiologic follow-up study. Am J Public Health. 1992 Mar; 82(3):401-6. PMID: 1536356; PMCID: PMC1694385.
      128. Ashby M, Neuhaus JM, Hauck WW, Bacchetti P, Heilbron DC, Jewell NP, Segal MR, Fusaro RE. An annotated bibliography of methods for analysing correlated categorical data. Stat Med. 1992 Jan 15; 11(1):67-99. PMID: 1557577.
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      129. Weiss ST, Tosteson TD, Segal MR, Tager IB, Redline S, Speizer FE. Effects of asthma on pulmonary function in children. A longitudinal population-based study. Am Rev Respir Dis. 1992 Jan; 145(1):58-64. PMID: 1731600.
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      130. Guthrie PB, Segal M, Kater SB. Independent regulation of calcium revealed by imaging dendritic spines. Nature. 1991 Nov 7; 354(6348):76-80. PMID: 1944573.
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      131. Tager IB, Segal MR. Temporal trends in chronic obstructive lung disease case fatality in hospitalized US veterans: 1970-1987. Chest. 1991 May; 99(5):1126-33. PMID: 2019167.
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      132. Sparrow D, O'Connor GT, Rosner B, Segal MR, Weiss ST. The influence of age and level of pulmonary function on nonspecific airway responsiveness. The Normative Aging Study. Am Rev Respir Dis. 1991 May; 143(5 Pt 1):978-82. PMID: 2024853.
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      133. Cassano PA, Segal MR, Vokonas PS, Weiss ST. Body fat distribution, blood pressure, and hypertension. A prospective cohort study of men in the normative aging study. Ann Epidemiol. 1990 Oct; 1(1):33-48. PMID: 1669488.
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      134. Troisi RJ, Weiss ST, Segal MR, Cassano PA, Vokonas PS, Landsberg L. The relationship of body fat distribution to blood pressure in normotensive men: the normative aging study. Int J Obes. 1990 Jun; 14(6):515-25. PMID: 2401588.
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      135. Colditz GA, Willett WC, Stampfer MJ, London SJ, Segal MR, Speizer FE. Patterns of weight change and their relation to diet in a cohort of healthy women. Am J Clin Nutr. 1990 Jun; 51(6):1100-5. PMID: 2349925.
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      136. Hanrahan JP, Tager IB, Castile RG, Segal MR, Weiss ST, Speizer FE. Pulmonary function measures in healthy infants. Variability and size correction. Am Rev Respir Dis. 1990 May; 141(5 Pt 1):1127-35. PMID: 2339835.
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      137. Parker DR, O'Connor GT, Sparrow D, Segal MR, Weiss ST. The relationship of nonspecific airway responsiveness and atopy to the rate of decline of lung function. The Normative Aging Study. Am Rev Respir Dis. 1990 Mar; 141(3):589-94. PMID: 2178525.
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      138. Segal M, Bacchetti P. Deficits in AIDS incidence. J Acquir Immune Defic Syndr. 1990; 3(8):832-5. PMID: 2366150.
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      139. O'Connor GT, Sparrow D, Segal MR, Weiss ST. Smoking, atopy, and methacholine airway responsiveness among middle-aged and elderly men. The Normative Aging Study. Am Rev Respir Dis. 1989 Dec; 140(6):1520-6. PMID: 2690701.
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      140. Garshick E, Segal MR, Worobec TG, Salekin CM, Miller MJ. Alcohol consumption and chronic obstructive pulmonary disease. Am Rev Respir Dis. 1989 Aug; 140(2):373-8. PMID: 2764374.
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      141. Sherman CB, Barnhart S, Miller MF, Segal MR, Aitken M, Schoene R, Daniell W, Rosenstock L. Firefighting acutely increases airway responsiveness. Am Rev Respir Dis. 1989 Jul; 140(1):185-90. PMID: 2665585.
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      142. Redline S, Tager IB, Segal MR, Gold D, Speizer FE, Weiss ST. The relationship between longitudinal change in pulmonary function and nonspecific airway responsiveness in children and young adults. Am Rev Respir Dis. 1989 Jul; 140(1):179-84. PMID: 2751164.
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      143. Segal MR, Bloch DA. A comparison of estimated proportional hazards models and regression trees. Stat Med. 1989 May; 8(5):539-50. PMID: 2727474.
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      144. Gold DR, Weiss ST, Tager IB, Segal MR, Speizer FE. Comparison of questionnaire and diary methods in acute childhood respiratory illness surveillance. Am Rev Respir Dis. 1989 Mar; 139(3):847-9. PMID: 2923381.
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      145. Schurman DJ, Bloch DA, Segal MR, Tanner CM. Conventional cemented total hip arthroplasty. Assessment of clinical factors associated with revision for mechanical failure. Clin Orthop Relat Res. 1989 Mar; (240):173-80. PMID: 2917432.
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      146. Edworthy SM, Bloch DA, McShane DJ, Segal MR, Fries JF. A "state model" of renal function in systemic lupus erythematosus: its value in the prediction of outcome in 292 patients. J Rheumatol. 1989 Jan; 16(1):29-35. PMID: 2716006.
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      147. Tager IB, Segal MR, Speizer FE, Weiss ST. The natural history of forced expiratory volumes. Effect of cigarette smoking and respiratory symptoms. Am Rev Respir Dis. 1988 Oct; 138(4):837-49. PMID: 3202458.
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      148. Segal M. Synaptic activation of a cholinergic receptor in rat hippocampus. Brain Res. 1988 Jun 14; 452(1-2):79-86. PMID: 3401751.
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      149. Segal MR, Weiss ST, Speizer FE, Tager IB. Smoothing methods for epidemiologic analysis. Stat Med. 1988 May; 7(5):601-11. PMID: 3387719.
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      150. Garshick E, Schenker MB, Muñoz A, Segal M, Smith TJ, Woskie SR, Hammond SK, Speizer FE. A retrospective cohort study of lung cancer and diesel exhaust exposure in railroad workers. Am Rev Respir Dis. 1988 Apr; 137(4):820-5. PMID: 3354987.
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      151. Fries JF, Bloch DA, Segal MR, Spitz PW, Williams C, Lane NE. Postmarketing surveillance in rheumatology: analysis of purpura and upper abdominal pain. J Rheumatol. 1988 Feb; 15(2):348-55. PMID: 3361544.
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      152. O'Connor G, Sparrow D, Taylor D, Segal M, Weiss S. Analysis of dose-response curves to methacholine. An approach suitable for population studies. Am Rev Respir Dis. 1987 Dec; 136(6):1412-7. PMID: 3318599.
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      153. Tager IB, Segal MR, Munoz A, Weiss ST, Speizer FE. The effect of maternal cigarette smoking on the pulmonary function of children and adolescents. Analyses of data from two populations. Am Rev Respir Dis. 1987 Dec; 136(6):1366-70. PMID: 3688640.
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      154. Garshick E, Schenker MB, Muñoz A, Segal M, Smith TJ, Woskie SR, Hammond SK, Speizer FE. A case-control study of lung cancer and diesel exhaust exposure in railroad workers. Am Rev Respir Dis. 1987 Jun; 135(6):1242-8. PMID: 3592400.
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      155. Krieger M, Martin J, Segal M, Kingsley D. Amphotericin B selection of mutant Chinese hamster cells with defects in the receptor-mediated endocytosis of low density lipoprotein and cholesterol biosynthesis. Proc Natl Acad Sci U S A. 1983 Sep; 80(18):5607-11. PMID: 6310583; PMCID: PMC384307.
      156. James IR, Segal MR. On a method of mortality analysis incorporating age--year interaction, with application to prostate cancer mortality. Biometrics. 1982 Jun; 38(2):433-43. PMID: 7115872.
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      157. Holman CD, James IR, Segal MR, Armstrong BK. Recent trends in mortality from prostate cancer in male populations of Australia and England and Wales. Br J Cancer. 1981 Sep; 44(3):340-8. PMID: 7284231; PMCID: PMC2010771.
      158. Langmoen IA, Segal M, Andersen P. Mechanisms of norepinephrine actions on hippocampal pyramidal cells in vitro. Brain Res. 1981 Mar 16; 208(2):349-62. PMID: 6260288.
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      159. Segal M. The actions of glutamic acid on neurons in the rat hippocampal slice. Adv Biochem Psychopharmacol. 1981; 27:217-25. PMID: 7446275.
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      160. Segal M. Lithium and the monoamine neurotransmitters in the rat hippocampus. Nature. 1974 Jul 5; 250(461):71-3. PMID: 4841165.
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